BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC37ZF03FM1.SCF screened BAC_end
(948 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1804 1419 0.0
>3x_Contig1804
Length = 51183
Score = 1419 bits (716), Expect = 0.0
Identities = 838/871 (96%), Gaps = 6/871 (0%)
Strand = Plus / Minus
Query: 82 caagtaatcaagatggttttctttatcaaccacattcttgtatggtgtctttttgctgga 141
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 26275 caagtaatcaagatggttttctttatcaaccacattcttgtatggtgtctttttgctgga 26216
Query: 142 ttcttccgaggtatctacttcattcacatcttcagaatgagctttttccatcacgacttc 201
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 26215 ttcttccgaggtatctacttcattcacatcttcagaatgagctttttccatcacgacttc 26156
Query: 202 aagttcctttttctccaagctcaactttggtaagaaagttgagttaccaaccagctctgc 261
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 26155 aagttcctttttctccaagctcaactttggtaagaaagttgagttaccaaccagctctgc 26096
Query: 262 ctcttctatagactttccaacgtagatattgtcgaatgatatatcgcttgcacttgacca 321
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 26095 ctcttctatagactttccaacgtagatattgtcgaatgatatatcgcttgcacttgacca 26036
Query: 322 aatatcaaaggaaattgcagtaatagcatcaatgttcgctggtgttttatcctcataata 381
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 26035 aatatcaaaggaaattgcagtaatagcatcaatgttcgctggtgttttatcctcataata 25976
Query: 382 attgggattcgctatgagaggcgccttccattcaccttgataattggggttagggatcat 441
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 25975 attgggattcgctatgagaggcgccttccattcaccttgataattggggttagggatcat 25916
Query: 442 ttcagccttccaagtacctctgtatttttcattttcaaccatctttggtctccactttcc 501
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 25915 ttcagccttccaagtacctctgtatttttcattttcaaccatctttggtctccactttcc 25856
Query: 502 acaaccttgtttcgtatagcacgaaggattaacaataaggggagcaatccatcttccatc 561
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 25855 acaaccttgtttcgtatagcacgaaggattaacaataaggggagcaatccatcttccatc 25796
Query: 562 caccttgtcattccaccaatctggtttagaacgcgattcatcctcgatgtattcagagat 621
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 25795 caccttgtcattccaccaatctggtttagaacgcgattcatcctcgatgtattcagagat 25736
Query: 622 gctgtcatcccattcctctggttttttgaacattggatctggaatccacttgggttcatt 681
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 25735 gctgtcatcccattcctctggttttttgaacattggatctggaatccacttgggttcatt 25676
Query: 682 ttcatcccagtctttccgttttatggcagtgggatcatggatcatagacctgctgcccca 741
|||||||||||||| | |||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 25675 ttcatcccagtcttccggttttatggcagtgggatcagggatcatagacctgctgcccca 25616
Query: 742 atccgctggctgactagcagaatggatcttcattttccctttggagattttagcttgggt 801
|||||||||||||||||||||| ||||||||| |||||| |||||| ||||| |||||
Sbjct: 25615 atccgctggctgactagcagaa-ggatcttcaatttccc-ttggaggatttaggctgggt 25558
Query: 802 ctgaatgttcccttcgcaagc-agttttctgccctgacaac-tctccatgnattctattt 859
||||||||||||| ||||||| ||||| ||||| ||||||| ||||||| |||||| ||
Sbjct: 25557 ctgaatgttccctccgcaagcaagtttcctgccttgacaacttctccatcgattctaatt 25498
Query: 860 tc-aatgactgatcttgcgaatttaatatcaaggtgtattaaccagtaatgcgttggtct 918
|| |||||||||||| || | |||||||||||||||| ||| |||||| ||||||||
Sbjct: 25497 tcaaatgactgatctgcagagtctaatatcaaggtgtataaacgagtaatcggttggtct 25438
Query: 919 -atcccgaaagtggggcctctgttaaatact 948
|||| |||||||| || |||||||| ||||
Sbjct: 25437 aatcctgaaagtggtgcttctgttaagtact 25407
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6328
Number of Sequences: 1807
Number of extensions: 6328
Number of successful extensions: 47
Number of sequences better than 1.0e-20: 1
length of query: 948
length of database: 10,358,551
effective HSP length: 16
effective length of query: 932
effective length of database: 10,329,639
effective search space: 9627223548
effective search space used: 9627223548
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)