BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC37ZF04RM1.SCF screened BAC_end
(930 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1488 1487 0.0
>3x_Contig1488
Length = 9807
Score = 1487 bits (750), Expect = 0.0
Identities = 805/822 (97%), Gaps = 1/822 (0%)
Strand = Plus / Plus
Query: 47 taggtttgatttggtttgcataaatcttttgttgataaatatcaagaaacgtaatttcct 106
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6230 taggtttgatttggtttgcataaatcttttgttgataaatatcaagaaacgtaatttcct 6289
Query: 107 gaagttaggccgagataatgaaacaggaaagtatggaaacttaccatttcagaagctaag 166
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6290 gaagttaggccgagataatgaaacaggaaagtatggaaacttaccatttcagaagctaag 6349
Query: 167 caaccaacagagacgtgttaccgcgtatgacatatagcgtggtttctgtgggatgaatca 226
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6350 caaccaacagagacgtgttaccgcgtatgacatatagcgtggtttctgtgggatgaatca 6409
Query: 227 ggactctgtagtccccaattcggaggctagtgatgaagagatcgtaatacctctgcattc 286
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6410 ggactctgtagtccccaattcggaggctagtgatgaagagatcgtaatacctctgcattc 6469
Query: 287 ggaaccaaatgtatttccaatcttcgatgacgaataccaggtacgcgtcattccgggcag 346
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6470 ggaaccaaatgtatttccaatcttcgatgacgaataccaggtacgcgtcattccgggcag 6529
Query: 347 tctcgataacgtagcacagacacctcctgatattggagtttactctaatagtataagacg 406
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6530 tctcgataacgtagcacagacacctcctgatattggagtttactctaatagtataagacg 6589
Query: 407 tgcattgagaaagcgtaaagcaatccagaagatgccgtatagtttggatagaatacggca 466
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6590 tgcattgagaaagcgtaaagcaatccagaagatgccgtatagtttggatagaatacggca 6649
Query: 467 tcggcagttattgcaagggtacgatgtatctaatttcgaatctctagcagatcatatcaa 526
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6650 tcggcagttattgcaagggtacgatgtatctaatttcgaatctctagcagatcatatcaa 6709
Query: 527 tctgccgagtggttcccggcaagatattactgttaatacggacaatgggggcgtgctcaa 586
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6710 tctgccgagtggttcccggcaagatattactgttaatacggacaatgggggcgtgctcaa 6769
Query: 587 ttcgagtcctgtgaagggcggcctttcacagcaagaacactcgactattgcgtcaacaag 646
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6770 ttcgagtcctgtgaagggcggcctttcacagcaagaacactcgactattgcgtcaacaag 6829
Query: 647 gctttcgaggcatcaccatttccatatttcagatgatgatgatgatgatgaggtatatgg 706
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6830 gcttcgaaggcatcaccatttccatatttcagatgatgatgatgatgatgaggtatatgg 6889
Query: 707 gaatgctgaactagacagcgatgatattcgtgacgagtgtcattcggaaagtgactcgga 766
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
Sbjct: 6890 taatgctgaactagacagcgatgaaattcgtgacgagtgtcattcggaaagtgactcgaa 6949
Query: 767 tcagtttgatagatccagtttattctatgatgataacgttgtttttagaggaaagcgagt 826
||||||||||||||||||||||| ||||||||||||||||||||||||||||| || |||
Sbjct: 6950 tcagtttgatagatccagtttatcctatgatgataacgttgtttttagaggaaggcaagt 7009
Query: 827 tcatttcaggacaggatac-aaggggttttaccccaaatggc 867
|| |||| ||||||||| |||| || |||||| |||||||
Sbjct: 7010 caatatcagaacaggatacaaaggtgtattacccaaaatggc 7051
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6789
Number of Sequences: 1807
Number of extensions: 6789
Number of successful extensions: 304
Number of sequences better than 1.0e-20: 1
length of query: 930
length of database: 10,358,551
effective HSP length: 16
effective length of query: 914
effective length of database: 10,329,639
effective search space: 9441290046
effective search space used: 9441290046
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)