BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC37ZF05FM1.SCF screened BAC_end
(899 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1768 1354 0.0
>3x_Contig1768
Length = 25668
Score = 1354 bits (683), Expect = 0.0
Identities = 741/756 (98%), Gaps = 4/756 (0%)
Strand = Plus / Minus
Query: 87 tggatatattcatccaatgcatcattcccatcatccaaatcatccttgctgttgtctttt 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24677 tggatatattcatccaatgcatcattcccatcatccaaatcatccttgctgttgtctttt 24618
Query: 147 gtcagaacatgagtatttgtatcgtttctacgcggcttgaataacgttgatgtggaattt 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24617 gtcagaacatgagtatttgtatcgtttctacgcggcttgaataacgttgatgtggaattt 24558
Query: 207 tcatcatcagattcactatcacttcccccaaaagcaggacgttttctcgaacactgtccc 266
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24557 tcatcatcagattcactatcacttcccccaaaagcaggacgttttctcgaacactgtccc 24498
Query: 267 cttcgtttgttcctgtccctatccgcagactttatactggtaagttttatatccttttgc 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24497 cttcgtttgttcctgtccctatccgcagactttatactggtaagttttatatccttttgc 24438
Query: 327 ttgagttcatcttgttgtttcttcttcttcttccatgcctctagtttcttcagtctctct 386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24437 ttgagttcatcttgttgtttcttcttcttcttccatgcctctagtttcttcagtctctct 24378
Query: 387 tccttagcatctacagaaacagatgctgtaacatcattattcagtttctgttttttccac 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24377 tccttagcatctacagaaacagatgctgtaacatcattattcagtttctgttttttccac 24318
Query: 447 ttagcaagtttctcttgcctaatccgtagcttttccgtttgatccataacgctcaccttc 506
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24317 ttagcaagtttctcttgcctaatccgtagcttttccgtttgatccataacgctcaccttc 24258
Query: 507 gtaatttaattgggtcttttttcttctttctgtgtgctatctttcaagtattaatcctga 566
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24257 gtaatttaattgggtcttttttcttctttctgtgtgctatctttcaagtattaatcctga 24198
Query: 567 atggttttaaggttttgttaattcaatattataggtattttgatattgaaggaaatcctt 626
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24197 atggttttaaggttttgttaattcaatattataggtattttgatattgaaggaaatcctt 24138
Query: 627 tccaaatgggtattttaaactactaaatgaagatggggaacacgctacctagttcattgc 686
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 24137 tccaaatgggtattttaaactactaaatgaagatgggaaacacgctacctagttcattgc 24078
Query: 687 attcagttcatatgacaattgnctatatnctttgttatagggggctaaag-tgactgatc 745
||||||||||||||||||||| |||||| |||||||||| | | |||||| |||||||||
Sbjct: 24077 attcagttcatatgacaattgtctatattctttgttata-gtgtctaaagttgactgatc 24019
Query: 746 ttcttaagcatctattcattatttcttcatttagtcctaaataaccactttccaagtgac 805
|||| ||||||||||||||||||||||||||||||| |||||||| |||| | |||||||
Sbjct: 24018 ttctaaagcatctattcattatttcttcatttagtcttaaataacaacttccaaagtgac 23959
Query: 806 attctgaagtc-aaatgtacaangattaaaaaatgc 840
| ||||||||| |||||||||| |||||||||||||
Sbjct: 23958 a-tctgaagtcaaaatgtacaaggattaaaaaatgc 23924
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8879
Number of Sequences: 1807
Number of extensions: 8879
Number of successful extensions: 269
Number of sequences better than 1.0e-20: 1
length of query: 899
length of database: 10,358,551
effective HSP length: 16
effective length of query: 883
effective length of database: 10,329,639
effective search space: 9121071237
effective search space used: 9121071237
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)