BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC37ZF05RM1.SCF screened BAC_end
(871 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig904 710 0.0
>3x_Contig904
Length = 3319
Score = 710 bits (358), Expect = 0.0
Identities = 388/396 (97%), Gaps = 2/396 (0%)
Strand = Plus / Minus
Query: 43 gcttttcaaaataaattactattaaacgaacaagaaaccgatgaggacggcggaaattat 102
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 915 gcttttcaaaataaattactattaaacgaacaagaaaccgatgaggacggcggaaattat 856
Query: 103 gctacttgtgatggatgtggcgggttgattaaaccgaagattgtattcttcggtgaaggg 162
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 855 gctacttgtgatggatgtggcgggttgattaaaccgaagattgtattcttcggtgaaggg 796
Query: 163 ttacctaccgagttcttcgatacgtgggatttggatagctctacgaaggaaaaaacagtt 222
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 795 ttacctaccgagttcttcgatacgtgggatttggatagctctacgaaggaaaaaacagtt 736
Query: 223 tgtattgtctgtggtacgtccttaactgtgtacccgtttgcatcgttacccatggaggca 282
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 735 tgtattgtctgtggtacgtccttaactgtgtacccgtttgcatcgttacccatggaggca 676
Query: 283 ccgaattcgtggcttatggtgctactgaaccgtgagatagttggtgatntcaagacctca 342
|||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 675 ccgaattcgtggcttagggtgctactgaaccgtgagatagttggtgatttcaagacctca 616
Query: 343 cgcccagatactgatctgatattcaagggctctgcagattatgcagnctttttgcttgcc 402
|||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 615 cgccaagatactgatctgatattcaagggctctgcagattatgcagcctttttgcttgcc 556
Query: 403 caagagtttgtgcttgcttcaaagatttggaaaacc 438
|||||| ||||||| || || |||||||||||||||
Sbjct: 555 caagag-ttgtgctggc-tcgaagatttggaaaacc 522
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 14,904
Number of Sequences: 1807
Number of extensions: 14904
Number of successful extensions: 167
Number of sequences better than 1.0e-20: 1
length of query: 871
length of database: 10,358,551
effective HSP length: 16
effective length of query: 855
effective length of database: 10,329,639
effective search space: 8831841345
effective search space used: 8831841345
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)