BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC37ZF06RM1.SCF screened BAC_end
(943 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1694 1259 0.0
>3x_Contig1694
Length = 18020
Score = 1259 bits (635), Expect = 0.0
Identities = 834/885 (94%), Gaps = 14/885 (1%)
Strand = Plus / Minus
Query: 47 caattcttccgtttctatgacatctgaatgcgaggaaggctcatctgagtcattactccc 106
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17926 caattcttccgtttctatgacatctgaatgcgaggaaggctcatctgagtcattactccc 17867
Query: 107 agtgttcctttctgaatctaacacgcctgaacttgaagtaaaatccatttagatgaaata 166
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17866 agtgttcctttctgaatctaacacgcctgaacttgaagtaaaatccatttagatgaaata 17807
Query: 167 ttattaactaactaacagctgctgggatcacgatcaacccataagccccatgttatcttg 226
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 17806 ttattaactaactaacagctgctgggatcacgatcaacccagaagccccatgttatcttg 17747
Query: 227 gacaggtaagatgacgataaacgtagtattataggaaatacataaagagaactattatca 286
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17746 gacaggtaagatgacgataaacgtagtattataggaaatacataaagagaactattatca 17687
Query: 287 taggtatcacagaaaagaaaataatttttcattttgtaacgttgtttcctttatagtgta 346
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17686 taggtatcacagaaaagaaaataatttttcattttgtaacgttgtttcctttatagtgtg 17627
Query: 347 tatatatatatatgttgnttaacacatttatgattttttcagtttgaaaacataaccata 406
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17626 tatatatatatatgttgtttaacacatttatgattttttcagtttgaaaacataaccata 17567
Query: 407 aaaaaaccttaaaatcgagccggacagacacaattagaggataatgtttccaagatgcaa 466
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17566 aaaaaaccttaaaatcgagccggacagacacaattagaggataatgtttccaagatgcaa 17507
Query: 467 ggaacgaatcccacatcggcataaaagtgacagtccatacaagtgactcaatagaggata 526
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17506 ggaacgaatcccacatcggcataaaagtgacagtccatacaagtgactcaatagaggata 17447
Query: 527 ctatacaatgggcggngcacataacaatgagtattcttttttatattcttagatttcctt 586
||||||||||||||| ||||| ||||||||||||||||||||| ||||||||||||||||
Sbjct: 17446 ctatacaatgggcggggcacaaaacaatgagtattcttttttaaattcttagatttcctt 17387
Query: 587 tcatgtaatggatgatgacatgttgagtatacgttacgcattaatgatatatcaagagat 646
|||||||| ||| |||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 17386 tcatgtaagggaggatgacatgttgagtatacgttacgcattaatgatataacaagagat 17327
Query: 647 cagcgatttaaaa--canttatcagtttatctccttctctnctta-ttggtgccttcttc 703
||||||| ||||| | |||||||||||||||||||||| |||| ||||||||||||||
Sbjct: 17326 cagcgatataaaaacaaattatcagtttatctccttctctccttatttggtgccttcttc 17267
Query: 704 a-caccgngaacttgcttggagatgtact-agcagcttca-cta-cctggtcttgcctt- 758
| ||||| ||||||||||||||||||||| |||||||||| ||| | || ||||| |||
Sbjct: 17266 accaccgtgaacttgcttggagatgtactcagcagcttcacctagcttgttcttggcttc 17207
Query: 759 attgacatatcctgaagc-gtttcaccgaagga-ttttcagtagcatcgtccttacctt- 815
|| ||||||| || ||| ||||||||||| || ||| |||||||||||||||||||||
Sbjct: 17206 atcgacatattcttgagcggtttcaccgaaagactttccagtagcatcgtccttaccttc 17147
Query: 816 ttgggcaaattccgggactgtttga-cttaacccttgttttttgggggtttgaccttacc 874
||||||| | || ||||||||||| || |||| ||||||| | | |||| ||||||||
Sbjct: 17146 ttgggcagagtcgtggactgtttgacctaaacctttgttttcttgtggttgaaccttacc 17087
Query: 875 ggcca-cttgtca-ctttgtcagttacaacttctttacctttttc 917
||||| ||||||| ||| ||||||||||||||| ||||| |||||
Sbjct: 17086 ggccagcttgtcagcttggtcagttacaacttccttacccttttc 17042
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 10,930
Number of Sequences: 1807
Number of extensions: 10930
Number of successful extensions: 1061
Number of sequences better than 1.0e-20: 1
length of query: 943
length of database: 10,358,551
effective HSP length: 16
effective length of query: 927
effective length of database: 10,329,639
effective search space: 9575575353
effective search space used: 9575575353
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)