BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC37ZF07FM1.SCF screened BAC_end
(923 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1556 1090 0.0
3x_Contig1589 297 2e-80
>3x_Contig1556
Length = 10874
Score = 1090 bits (550), Expect = 0.0
Identities = 550/550 (100%)
Strand = Plus / Plus
Query: 86 caaatttcaatataattattagtaaactacttctacataccgttttttaatcatttcatc 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10317 caaatttcaatataattattagtaaactacttctacataccgttttttaatcatttcatc 10376
Query: 146 ctttcgtcatattatcacaggctatttttgagcactaagatccccatcgtctctgcaatg 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10377 ctttcgtcatattatcacaggctatttttgagcactaagatccccatcgtctctgcaatg 10436
Query: 206 tatgttttgcctttgtctgtcttccctcattattttatgcagatttgattatgagaattt 265
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10437 tatgttttgcctttgtctgtcttccctcattattttatgcagatttgattatgagaattt 10496
Query: 266 caacataaataaagatttgaaatatgtaaacaaaagacctgatgagatcaacaaaacaaa 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10497 caacataaataaagatttgaaatatgtaaacaaaagacctgatgagatcaacaaaacaaa 10556
Query: 326 cacaaaggcgagtcaaaaaagtgaatccaaccctgtcaacgcttgctgtgaggttacata 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10557 cacaaaggcgagtcaaaaaagtgaatccaaccctgtcaacgcttgctgtgaggttacata 10616
Query: 386 tctgctgctttagataacccggtgatatcacaatgaaagtggaagaacttatcatcgatg 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10617 tctgctgctttagataacccggtgatatcacaatgaaagtggaagaacttatcatcgatg 10676
Query: 446 ggttcaagtcatacgccacaagaactgtcattacagattgggatcctcaattcaacgcca 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10677 ggttcaagtcatacgccacaagaactgtcattacagattgggatcctcaattcaacgcca 10736
Query: 506 tcactggtttaaacgggtcaggtaaatcgaatattttagatgcgatatgttttgtgttgg 565
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10737 tcactggtttaaacgggtcaggtaaatcgaatattttagatgcgatatgttttgtgttgg 10796
Query: 566 gtatttcatcaatggcaaccgttcgtgctcaaaatttacaggatttgatctacaagagag 625
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10797 gtatttcatcaatggcaaccgttcgtgctcaaaatttacaggatttgatctacaagagag 10856
Query: 626 gtcaggctgg 635
||||||||||
Sbjct: 10857 gtcaggctgg 10866
>3x_Contig1589
Length = 10239
Score = 297 bits (150), Expect = 2e-80
Identities = 214/226 (94%), Gaps = 7/226 (3%)
Strand = Plus / Minus
Query: 649 agtgttaccatcgtatttaataatagcgataccagtaattcaccaattggatttgaatcg 708
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10239 agtgttaccatcgtatttaataatagcgataccagtaattcaccaattggatttgaatcg 10180
Query: 709 catgcgataatctcaatcactagacaaatcatatctc-gcggagtcagtaaatatctgat 767
||||||| ||||||||||||||||||||||||| ||| ||||||||||||||||||||||
Sbjct: 10179 catgcgaaaatctcaatcactagacaaatcata-ctcggcggagtcagtaaatatctgat 10121
Query: 768 caatggtcatagggcccagcatc-aaccgtgcttcatttgtttcaatcggtgcatttg-a 825
||||||||||||||||||||| | |||||||||||| ||||||||||||||||| ||| |
Sbjct: 10120 caatggtcatagggcccagcaacaaaccgtgcttcagttgtttcaatcggtgcaattgaa 10061
Query: 826 tatt-attacccgaac-ttttgatcatgcaaggt-aaattaccaag 868
|||| || |||||||| ||||||||||||||||| |||||||||||
Sbjct: 10060 tattaataacccgaactttttgatcatgcaaggtaaaattaccaag 10015
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6839
Number of Sequences: 1807
Number of extensions: 6839
Number of successful extensions: 62
Number of sequences better than 1.0e-20: 2
length of query: 923
length of database: 10,358,551
effective HSP length: 16
effective length of query: 907
effective length of database: 10,329,639
effective search space: 9368982573
effective search space used: 9368982573
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)