BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC37ZF07RM1.SCF screened BAC_end
(942 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig707 531 e-151
3x_Contig1704 379 e-105
>3x_Contig707
Length = 1885
Score = 531 bits (268), Expect = e-151
Identities = 408/443 (92%), Gaps = 10/443 (2%)
Strand = Plus / Minus
Query: 496 tggcggccaatctttgtgccgttttcgacgctcagtgcagatcataaagagctgccagat 555
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1885 tggcggccaatctttgtgccgttttcgacgctcagtgcagatcataaagagctgccagat 1826
Query: 556 tctatcttcggatcggatataataaggactttgacaccaatcaaaacattcatggatatt 615
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1825 tctatcttcggatcggatataataaggactttgacaccaatcaaaacattcatggatatt 1766
Query: 616 agatntactatagactctgatactccaacacagattacctgnnggtaatctcttcagcca 675
|||| |||||||||||||||||||||||||||||||||||| | ||||||||||||||
Sbjct: 1765 agatttactatagactctgatactccaacacagattacctggggtaaatctcttcagcca 1706
Query: 676 ggttatcanagcgtaatgttgttgttttgatttcctaacgaagccctcaatggatccatc 735
|||||||| |||||||||||| || |||||||||||||||||||| |||||||||||||
Sbjct: 1705 ggttatcaaagcgtaatgttg-tggtttgatttcctaacgaagcctccaatggatccatc 1647
Query: 736 tcccatagtaaggtttctgggataaaatcaagccttttatttcatggtaaactcgagttt 795
||||| ||| ||| ||||||||||||||| || |||||||||||||||||||||||| ||
Sbjct: 1646 tcccaaagt-agggttctgggataaaatc-aggcttttatttcatggtaaactcgag-tt 1590
Query: 796 ccaatggcttattaatagntcaatgcacttaaatttaaggggatcaagttgatcc-tatt 854
||||||||||| |||||| ||||||||||||||||| | ||||||||| |||||| ||||
Sbjct: 1589 ccaatggcttagtaatagttcaatgcacttaaattttaagggatcaag-tgatccttatt 1531
Query: 855 cgattgcagattgta-gagccagcatgacttttgcttggaatggtggacccaaaaatgac 913
|||| ||||| |||| |||| ||||||| |||||||||| |||| ||| ||||||||||
Sbjct: 1530 cgatagcaga-tgtaggagcaggcatgacatttgcttggagtggt-gacacaaaaatgac 1473
Query: 914 atttattggttcctgaaagacca 936
||| ||||| |||||||||||
Sbjct: 1472 cattaatggtt-ctgaaagacca 1451
>3x_Contig1704
Length = 14855
Score = 379 bits (191), Expect = e-105
Identities = 191/191 (100%)
Strand = Plus / Minus
Query: 51 cggaactgaagaatatctcaatcaacagtataccagactttatgagaatttttcaacttc 110
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 202 cggaactgaagaatatctcaatcaacagtataccagactttatgagaatttttcaacttc 143
Query: 111 ttggatagcaagatatcgagttgctaaaaggaagtttcatggtgctgaatcttatgcagt 170
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 142 ttggatagcaagatatcgagttgctaaaaggaagtttcatggtgctgaatcttatgcagt 83
Query: 171 caataacaccattttagactacgaattttccacgttttctgttgacaacgatgtaaattc 230
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 82 caataacaccattttagactacgaattttccacgttttctgttgacaacgatgtaaattc 23
Query: 231 actcaaaattt 241
|||||||||||
Sbjct: 22 actcaaaattt 12
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6430
Number of Sequences: 1807
Number of extensions: 6430
Number of successful extensions: 39
Number of sequences better than 1.0e-20: 2
length of query: 942
length of database: 10,358,551
effective HSP length: 16
effective length of query: 926
effective length of database: 10,329,639
effective search space: 9565245714
effective search space used: 9565245714
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)