BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC37ZF08FM1.SCF screened BAC_end
(901 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig332 1463 0.0
>3x_Contig332
Length = 1517
Score = 1463 bits (738), Expect = 0.0
Identities = 787/800 (98%), Gaps = 3/800 (0%)
Strand = Plus / Minus
Query: 86 ttaagaaattggctggcgatccatctcgattcttatcatctctagtgagtaacttgccca 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1321 ttaagaaattggctggcgatccatctcgattcttatcatctctagtgagtaacttgccca 1262
Query: 146 taaatatcgacaaggtgttccttatcagcaagtatggtggattgccgtctgtggaaagac 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1261 taaatatcgacaaggtgttccttatcagcaagtatggtggattgccgtctgtggaaagac 1202
Query: 206 atacaaacagccatgtctttgtaaatttgtcacaagaatatcgagaattgagaaacagtt 265
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1201 atacaaacagccatgtctttgtaaatttgtcacaagaatatcgagaattgagaaacagtt 1142
Query: 266 atcaaaatcaattggagaaactagaatctattcaagtggataatactgagaagaatttgg 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1141 atcaaaatcaattggagaaactagaatctattcaagtggataatactgagaagaatttgg 1082
Query: 326 tagaatctctacaattatttttgaatcaggataagattcttagtaacagcgatcaactga 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1081 tagaatctctacaattatttttgaatcaggataagattcttagtaacagcgatcaactga 1022
Query: 386 aatgtcatatggaagaccttgaaatcatgaataaaacgctatcagttctaccacattcgt 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1021 aatgtcatatggaagaccttgaaatcatgaataaaacgctatcagttctaccacattcgt 962
Query: 446 ctactgggctaattaccactattttagcagggtccaaattatcagataataacccattgg 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 961 ctactgggctaattaccactattttagcagggtccaaattatcagataataacccattgg 902
Query: 506 tatataatatcttgactgatcgttcattgatatcgtcatctttacctcgattcaaaagat 565
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 901 tatataatatcttgactgatcgttcattgatatcgtcatctttacctcgattcaaaagat 842
Query: 566 cggctgcggctcaatcgaaaagctggtatgagcttccatcttccaacgtggaagatgaag 625
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 841 cggctgcggctcaatcgaaaagctggtatgagcttccatcttccaacgtggaagaggaag 782
Query: 626 tcacttccgcaaacgattcagttcttgtgactacagttttcaagatggggattgatatcc 685
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 781 tcacttccgcaaacgattcagttcttgtgactacagttttcaagaaggggattgatatcc 722
Query: 686 atatatttgacttcangactttgaccgatgattattccattagtctaccaccatcgcaag 745
||||||||||||||| |||||||||||||||| ||||||| ||||||||||||||||||
Sbjct: 721 atatatttgacttcaggactttgaccgatgataattccataggtctaccaccatcgcaag 662
Query: 746 ctactcaaactggcatatctgacccagtatcgaanaaactcgatttgaat-aactggatg 804
||||||||||||||| |||||||||||||||||| ||||||||||||||| ||||| |||
Sbjct: 661 ctactcaaactggcaaatctgacccagtatcgaaaaaactcgatttgaataaactgaatg 602
Query: 805 ggataatcaattc-agtttttaaaggtcattggacctatcacattatctcggncaggatc 863
||||||||||||| |||||| ||||||||||||||||||||||||||||||| |||||||
Sbjct: 601 ggataatcaattcaagttttaaaaggtcattggacctatcacattatctcgg-caggatc 543
Query: 864 aatggtaacatagcgagcat 883
||||||||||||||||||||
Sbjct: 542 aatggtaacatagcgagcat 523
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6324
Number of Sequences: 1807
Number of extensions: 6324
Number of successful extensions: 40
Number of sequences better than 1.0e-20: 1
length of query: 901
length of database: 10,358,551
effective HSP length: 16
effective length of query: 885
effective length of database: 10,329,639
effective search space: 9141730515
effective search space used: 9141730515
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)