BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC37ZF08RM1.SCF screened BAC_end
(914 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1742 1358 0.0
>3x_Contig1742
Length = 17167
Score = 1358 bits (685), Expect = 0.0
Identities = 777/801 (97%), Gaps = 5/801 (0%)
Strand = Plus / Minus
Query: 41 aagcttttcatccctaatatctgttattggcttactattggaaaccaattgcggtggtaa 100
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14339 aagcttttcatccctaatatctgttattggcttactattggaaaccaattgcggtggtaa 14280
Query: 101 cgacaattttggaggcttggaattggttctcctagactctggtggtcggaacatcgaagc 160
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14279 cgacaattttggaggcttggaattggttctcctagactctggtggtcggaacatcgaagc 14220
Query: 161 catctttgctttcacttcacacttgtcttttccgtgggtccatacaaataatataaatat 220
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14219 catctttgctttcacttcacacttgtcttttccgtgggtccatacaaataatataaatat 14160
Query: 221 cagttaatatcaccttatgcgacaagtaaacagcgtttttttctattcaaacgtttgagc 280
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14159 cagttaatatcaccttatgcgacaagtaaacagcgtttttttctattcaaacgtttgagc 14100
Query: 281 tgtttttctttgaagtgtccgttgatattttcttctatcgaagtaaaaaggggaaacctc 340
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14099 tgtttttctttgaagtgtccgttgatattttcttctatcgaagtaaaaaggggaaacctc 14040
Query: 341 ggttctcgtgtcttaatcctcagcggatcgcttttatactcagtttatcgttttaaaatg 400
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14039 ggttctcgtgtcttaatcctcagcggatcgcttttatactcagtttatcgttttaaaatg 13980
Query: 401 cctctcgtatcgtattccactgggatacgtccggaatattactcctctgggcctcaggat 460
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13979 cctctcgtatcgtattccactgggatacgtccggaatattactcctctgggcctcaggat 13920
Query: 461 tctcttatgtgccagatcatctttataatgcaaagagccgtttaagtgaatttgttttat 520
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13919 tctcttatgtgccagatcatctttataatgcaaagagccgtttaagtgaatttgttttat 13860
Query: 521 taaagttcgaattaaagccttgtccctgaaaaaaaaaaaattcagagacagccgacgtga 580
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 13859 taaagttcgaattaaagccttgtcctgaaaaaaaaaaaaattcagagacagccgacgtga 13800
Query: 581 tcgaccagtacaaacattttaagattatataaggtttatcaactcatttttagtttcaca 640
|||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||
Sbjct: 13799 tcgaccagtacaaacattttaagattatataaggtttatcaactcattttaagttcaaca 13740
Query: 641 tctaccgtttccttttggttatttgaaatcagattttgaggttgaaacatttcaagcttc 700
|||||||||||| |||||||||||| ||||||||||||| ||||||||||||||||||||
Sbjct: 13739 tctaccgtttcc-tttggttatttggaatcagattttgaagttgaaacatttcaagcttc 13681
Query: 701 tacccataactttcatgctcgtattttagcagaaaccagttgatattatgttagaaaatc 760
|||||||||||| |||||||||||||||||||||||||||||||||||||| || | |||
Sbjct: 13680 tacccataacttccatgctcgtattttagcagaaaccagttgatattatgtaag-agatc 13622
Query: 761 actgaaacaaaggtg-tttagccaataatcgtcccattatgcatgttggagggtagg-ac 818
||||| |||||| || || |||||||||||||| || ||||||||||| | |||||| ||
Sbjct: 13621 actgagacaaagttgattaagccaataatcgtcgcagtatgcatgttgta-ggtaggtac 13563
Query: 819 ccttttattctatcggatcct 839
|||||||||||||| |||||
Sbjct: 13562 acttttattctatcgtatcct 13542
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 13,145
Number of Sequences: 1807
Number of extensions: 13145
Number of successful extensions: 84
Number of sequences better than 1.0e-20: 1
length of query: 914
length of database: 10,358,551
effective HSP length: 16
effective length of query: 898
effective length of database: 10,329,639
effective search space: 9276015822
effective search space used: 9276015822
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)