BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC37ZF09FM1.SCF screened BAC_end
(964 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1778 1505 0.0
>3x_Contig1778
Length = 27694
Score = 1505 bits (759), Expect = 0.0
Identities = 836/855 (97%), Gaps = 5/855 (0%)
Strand = Plus / Minus
Query: 86 cagagtttgaactggatgccgtttctggtctcttgtccgcttggttagactcttcagtat 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1743 cagagtttgaactggatgccgtttctggtctcttgtccgcttggttagactcttcagtat 1684
Query: 146 atccgtttttagtgatatcagaagaacccgaggcagaagcaggagtagttccattgacag 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1683 atccgtttttagtgatatcagaagaacccgaggcagaagcaggagtagttccattgacag 1624
Query: 206 aaatcttttcgttggtgccattcgagctcgatgtcttgtttgtctggcgatcctgcttct 265
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1623 aaatcttttcgttggtgccattcgagctcgatgtcttgtttgtctggcgatcctgcttct 1564
Query: 266 ttgttgctttcttttcgccttcagagtcctttttgggcttcgcggtagagtctttaccct 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1563 ttgttgctttcttttcgccttcagagtcctttttgggcttcgcggtagagtctttaccct 1504
Query: 326 tggtctttttggcaacctttggcttatccttcttggtcttatttttcagttttttaccct 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1503 tggtctttttggcaacctttggcttatccttcttggtcttatttttcagttttttaccct 1444
Query: 386 taccgccattagcattactgacatcaggaattttgtctttaacagtgatatccacatcta 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1443 taccgccattagcattactgacatcaggaattttgtctttaacagtgatatccacatcta 1384
Query: 446 atggaacccatctttccttaccggtcaaagacggagtacctttactacgagacttgctag 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1383 atggaacccatctttccttaccggtcaaagacggagtacctttactacgagacttgctag 1324
Query: 506 aactggagactttcttatttttagccgcaacaacctttgacaaatctaaaggcttatatt 565
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1323 aactggagactttcttatttttagccgcaacaacctttgacaaatctaaaggcttatatt 1264
Query: 566 cagtgacaccggtctcttcccaa-ggagacttttttggcaaaggtgccaacactaacttc 624
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 1263 cagtgacaccggtctcttcccaagggagacttttttggcaaaggtgccaacactaacttc 1204
Query: 625 ggcttttctccttcagaatcaacactggaagattctacatcatcattagcagtggcaaca 684
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1203 ggcttttctccttcagaatcaacactggaagattctacatcatcattagcagtggcaaca 1144
Query: 685 gtagtgtcgttactactggcagtagcaacctcaactgatacagcttcagtttcatgcgga 744
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 1143 gtagtgtcgttactactggcagtagcaacctcaactgaaacagcttcagtttcatgcgga 1084
Query: 745 gtatcagtaacaggatcagtgttagttgtaacagtttcagacatattagttctctaacgt 804
||||||||||||||| ||||| |||||||||||||||| |||||||| |||||||||||
Sbjct: 1083 gtatcagtaacaggaacagtggtagttgtaacagtttcggacatattgtttctctaacgt 1024
Query: 805 tttctctcggtccttctatattctctttcaaaccacattcggatgatgactaaaacactc 864
||||||||| ||||||||||||||||||||||| ||| || |||||||||||||||||||
Sbjct: 1023 tttctctcgttccttctatattctctttcaaacaacaatctgatgatgactaaaacactc 964
Query: 865 ttaagcc-aatttcaatgcaggtatatttgctttttttactggtc-gatcaaaac-taga 921
||||||| ||||||||||||| |||||||||||| ||||| ||| ||||||||| ||||
Sbjct: 963 ttaagccaaatttcaatgcagttatatttgctttctttacgtgtcggatcaaaacttaga 904
Query: 922 act-acacttactaa 935
||| |||||||||||
Sbjct: 903 actaacacttactaa 889
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6339
Number of Sequences: 1807
Number of extensions: 6339
Number of successful extensions: 46
Number of sequences better than 1.0e-20: 1
length of query: 964
length of database: 10,358,551
effective HSP length: 16
effective length of query: 948
effective length of database: 10,329,639
effective search space: 9792497772
effective search space used: 9792497772
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)