BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC37ZF10FM1.SCF screened BAC_end
(937 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig332 1477 0.0
>3x_Contig332
Length = 1517
Score = 1477 bits (745), Expect = 0.0
Identities = 835/856 (97%), Gaps = 7/856 (0%)
Strand = Plus / Minus
Query: 87 ttaagaaattggctggcgatccatctcgattcttatcatctctagtgagtaacttgccca 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1321 ttaagaaattggctggcgatccatctcgattcttatcatctctagtgagtaacttgccca 1262
Query: 147 taaatatcgacaaggtgttccttatcagcaagtatggtggattgccgtctgtggaaagac 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1261 taaatatcgacaaggtgttccttatcagcaagtatggtggattgccgtctgtggaaagac 1202
Query: 207 atacaaacagccatgtctttgtaaatttgtcacaagaatatcgagaattgagaaacagtt 266
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1201 atacaaacagccatgtctttgtaaatttgtcacaagaatatcgagaattgagaaacagtt 1142
Query: 267 atcaaaatcaattggagaaactagaatctattcaagtggataatactgagaagaatttgg 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1141 atcaaaatcaattggagaaactagaatctattcaagtggataatactgagaagaatttgg 1082
Query: 327 tagaatctctacaattatttttgaatcaggataagattcttagtaacagcgatcaactga 386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1081 tagaatctctacaattatttttgaatcaggataagattcttagtaacagcgatcaactga 1022
Query: 387 aatgtcatatggaagaccttgaaatcatgaataaaacgctatcagttctaccacattcgt 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1021 aatgtcatatggaagaccttgaaatcatgaataaaacgctatcagttctaccacattcgt 962
Query: 447 ctactgggctaattaccactattttagcagggtccaaattatcagataataacccattgg 506
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 961 ctactgggctaattaccactattttagcagggtccaaattatcagataataacccattgg 902
Query: 507 tatataatatcttgactgatcgttcattgatatcgtcatctttacctcgattcaaaagat 566
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 901 tatataatatcttgactgatcgttcattgatatcgtcatctttacctcgattcaaaagat 842
Query: 567 cggctgcggctcaatcgaaaagctggtatgagcttccatcttccaacgtggaagatgaag 626
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 841 cggctgcggctcaatcgaaaagctggtatgagcttccatcttccaacgtggaagaggaag 782
Query: 627 tcacttccgcaaacgattcagttcttgtgactacagttttcaagatggggattgatatcc 686
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 781 tcacttccgcaaacgattcagttcttgtgactacagttttcaagaaggggattgatatcc 722
Query: 687 atatatttgacttcaggactttgaccgatgantattccatatgtctaccaccatcgcaag 746
||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||
Sbjct: 721 atatatttgacttcaggactttgaccgatgataattccataggtctaccaccatcgcaag 662
Query: 747 ctactcaaactggcatatctgacccagtatcgaaaaaactcgatttgaataaactgaatg 806
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 ctactcaaactggcaaatctgacccagtatcgaaaaaactcgatttgaataaactgaatg 602
Query: 807 ggattatcaattc-agtttttaaaggtcattggacctatcacattattctc-gcaggatc 864
|||| |||||||| |||||| ||||||||||||||||||||||||| |||| ||||||||
Sbjct: 601 ggataatcaattcaagttttaaaaggtcattggacctatcacatta-tctcggcaggatc 543
Query: 865 aat-gtaacatagcgagcataaatcgt-ata-gagattttgaaagtatggcatttttgac 921
||| |||||||||||||||| |||||| ||| |||||| |||| |||| ||| |||||||
Sbjct: 542 aatggtaacatagcgagcat-aatcgtaataggagattatgaaggtattgcaattttgac 484
Query: 922 attcgaaaggccaaag 937
|| |||| ||||||||
Sbjct: 483 atacgaagggccaaag 468
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6861
Number of Sequences: 1807
Number of extensions: 6861
Number of successful extensions: 44
Number of sequences better than 1.0e-20: 1
length of query: 937
length of database: 10,358,551
effective HSP length: 16
effective length of query: 921
effective length of database: 10,329,639
effective search space: 9513597519
effective search space used: 9513597519
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)