BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC37ZF10RM1.SCF screened BAC_end
(931 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1742 1616 0.0
>3x_Contig1742
Length = 17167
Score = 1616 bits (815), Expect = 0.0
Identities = 874/889 (98%), Gaps = 4/889 (0%)
Strand = Plus / Minus
Query: 47 ttcatccctaatatctgttattggcttactattggaaaccaattgcggtggtaacgacaa 106
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14333 ttcatccctaatatctgttattggcttactattggaaaccaattgcggtggtaacgacaa 14274
Query: 107 ttttggaggcttggaattggttctcctagactctggtggtcggaacatcgaagccatctt 166
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14273 ttttggaggcttggaattggttctcctagactctggtggtcggaacatcgaagccatctt 14214
Query: 167 tgctttcacttcacacttgtcttttccgtgggtccatacaaataatataaatatcagtta 226
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14213 tgctttcacttcacacttgtcttttccgtgggtccatacaaataatataaatatcagtta 14154
Query: 227 atatcaccttatgcgacaagtaaacagcgtttttttctattcaaacgtttgagctgtttt 286
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14153 atatcaccttatgcgacaagtaaacagcgtttttttctattcaaacgtttgagctgtttt 14094
Query: 287 tctttgaagtgtccgttgatattttcttctatcgaagtaaaaaggggaaacctcggttct 346
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14093 tctttgaagtgtccgttgatattttcttctatcgaagtaaaaaggggaaacctcggttct 14034
Query: 347 cgtgtcttaatcctcagcggatcgcttttatactcagtttatcgttttaaaatgcctctc 406
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14033 cgtgtcttaatcctcagcggatcgcttttatactcagtttatcgttttaaaatgcctctc 13974
Query: 407 gtatcgtattccactgggatacgtccggaatattactcctctgggcctcaggattctctt 466
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13973 gtatcgtattccactgggatacgtccggaatattactcctctgggcctcaggattctctt 13914
Query: 467 atgtgccagatcatctttataatgcaaagagccgtttaagtgaatttgttttattaaagt 526
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13913 atgtgccagatcatctttataatgcaaagagccgtttaagtgaatttgttttattaaagt 13854
Query: 527 tcgaattaaagccttgtcctgaaaaaaaaaaaaattcagagacagccgacgtgatcgacc 586
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13853 tcgaattaaagccttgtcctgaaaaaaaaaaaaattcagagacagccgacgtgatcgacc 13794
Query: 587 agtacaaacattttaagattatataaggtttatcaactcattttaagttcaacatctacc 646
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13793 agtacaaacattttaagattatataaggtttatcaactcattttaagttcaacatctacc 13734
Query: 647 gtttcctttggttatttggaatcagattttgaagttgaaacatttcaagcttctacccat 706
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13733 gtttcctttggttatttggaatcagattttgaagttgaaacatttcaagcttctacccat 13674
Query: 707 aacttccatgctcgtattttagcagaaaccagttgatattatgtaagagatcactgagac 766
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13673 aacttccatgctcgtattttagcagaaaccagttgatattatgtaagagatcactgagac 13614
Query: 767 anagttgattaagccattattcgtcgcattatgcatgttgtaggtaaggacacttttatt 826
| |||||||||||||| || |||||||| ||||||||||||||||| | |||||||||||
Sbjct: 13613 aaagttgattaagccaataatcgtcgcagtatgcatgttgtaggtaggtacacttttatt 13554
Query: 827 ctatcgtatccttcattgcttatcgatgccggtgttattcttgct-tgatagg-catcga 884
||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||
Sbjct: 13553 ctatcgtatccttcattgcttatcgatgccggtgttattcttgctatgataggccatcga 13494
Query: 885 atgtt-aagggaagatntatgttttggccctttaaa-accaatttggac 931
||||| |||||||||| ||| ||| |||||||||| || |||||||||
Sbjct: 13493 atgttaaagggaagatttattgttttgccctttaaagacgaatttggac 13445
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 13,995
Number of Sequences: 1807
Number of extensions: 13995
Number of successful extensions: 212
Number of sequences better than 1.0e-20: 1
length of query: 931
length of database: 10,358,551
effective HSP length: 16
effective length of query: 915
effective length of database: 10,329,639
effective search space: 9451619685
effective search space used: 9451619685
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)