BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC37ZF11FM1.SCF screened BAC_end
(924 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1316 1588 0.0
>3x_Contig1316
Length = 8178
Score = 1588 bits (801), Expect = 0.0
Identities = 827/833 (99%), Gaps = 2/833 (0%)
Strand = Plus / Minus
Query: 86 cttcaatactggtaaaagtttccgtccaaacattgcagattctccaaggtatcccaatgt 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3084 cttcaatactggtaaaagtttccgtccaaacattgcagattctccaaggtatcccaatgt 3025
Query: 146 ccagattataatacttaaaaatatgatgactttcaatttgaaactgataaaacccttggc 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3024 ccagattataatacttaaaaatatgatgactttcaatttgaaactgataaaacccttggc 2965
Query: 206 atgctgtaatacgatttacaaagttcttacttgtccggtatccttttccttaaaatataa 265
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2964 atgctgtaatacgatttacaaagttcttacttgtccggtatccttttccttaaaatataa 2905
Query: 266 ctgattcgtcttttcagtaatttttctggttcttatactggcccgattttagatttcaag 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2904 ctgattcgtcttttcagtaatttttctggttcttatactggcccgattttagatttcaag 2845
Query: 326 aaacgagatgcgatgagatgattaatgagacatggcacataagggtaaagaacaaagcaa 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2844 aaacgagatgcgatgagatgattaatgagacatggcacataagggtaaagaacaaagcaa 2785
Query: 386 ctcacgttgatcctattattatcaggactaagcagaggagcaataatgacaagggctaag 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2784 ctcacgttgatcctattattatcaggactaagcagaggagcaataatgacaagggctaag 2725
Query: 446 agaccaagagttaatgttgaagtggaattagaaactgtgtcgaaatatttcaagaaggaa 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2724 agaccaagagttaatgttgaagtggaattagaaactgtgtcgaaatatttcaagaaggaa 2665
Query: 506 cctgaagaccaagtggtagttaaggtggaaggtaaccatgacattaaaacggatcccgaa 565
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2664 cctgaagaccaagtggtagttaaggtggaaggtaaccatgacattaaaacggatcccgaa 2605
Query: 566 atcgaggcaataaaaactatgggtacagatgagtactttaaatatgtgcaaaaattcact 625
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2604 atcgaggcaataaaaactatgggtacagatgagtactttaaatatgtgcaaaaattcact 2545
Query: 626 aatgatgacatctcccttaatagaaagcttcagatcgaggacaaccctaatatgccttcg 685
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2544 aatgatgacatctcccttaatagaaagcttcagatcgaggacaaccctaatatgccttcg 2485
Query: 686 aattttgtgtcgatatactcgaaagtaaggtttatgagatcgatgataaagactccagta 745
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2484 aattttgtgtcgatatactcgaaagtaaggtttatgagatcgatgataaagactccagta 2425
Query: 746 gacaatgttggatgtgcaatgctgccaattaccataaacggtgtatttggaatatcatag 805
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 2424 gacaatgttggatgtgcaatgctgccaattaccataaacggtgtatttggaatatcaaag 2365
Query: 806 tcaaatatgccaccctaagaactacagatttacaacttttagtttctttgatgttatctt 865
||||||||| || ||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 2364 tcaaatatg-caacctaagaactacaga-ttacaacttttagtttctttgatgttatctt 2307
Query: 866 cacagaccaaagatgaagtaaatgccaaagctatgcataatataatggaatat 918
|||||||||||||||| ||||||||||| ||||||||||||||||||||||||
Sbjct: 2306 cacagaccaaagatgaggtaaatgccaaggctatgcataatataatggaatat 2254
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6961
Number of Sequences: 1807
Number of extensions: 6961
Number of successful extensions: 94
Number of sequences better than 1.0e-20: 1
length of query: 924
length of database: 10,358,551
effective HSP length: 16
effective length of query: 908
effective length of database: 10,329,639
effective search space: 9379312212
effective search space used: 9379312212
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)