BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC37ZF11RM1.SCF screened BAC_end
(915 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1630 1653 0.0
>3x_Contig1630
Length = 14771
Score = 1653 bits (834), Expect = 0.0
Identities = 862/870 (99%), Gaps = 1/870 (0%)
Strand = Plus / Minus
Query: 47 caaggcttcattggtcactttggccggttgaggaattggggtaagactgtgaacatcttt 106
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9435 caaggcttcattggtcactttggccggttgaggaattggggtaagactgtgaacatcttt 9376
Query: 107 catggatacgtcctcatcgtgtacatcgttgtcactactgaccttgtctgaagcgctcaa 166
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9375 catggatacgtcctcatcgtgtacatcgttgtcactactgaccttgtctgaagcgctcaa 9316
Query: 167 cgcaccttgcagggaaagagtctgttgaaatctatttaatacggaactgtgctttgcatc 226
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9315 cgcaccttgcagggaaagagtctgttgaaatctatttaatacggaactgtgctttgcatc 9256
Query: 227 aactgattgctgagaagtttctgtaggcgcaacagatgcaaccttgttttcatcttgctc 286
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9255 aactgattgctgagaagtttctgtaggcgcaacagatgcaaccttgttttcatcttgctc 9196
Query: 287 actaattgtatcggaatcatcctcactgctggaagcatcatcctcactgctggaagcatc 346
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9195 actaattgtatcggaatcatcctcactgctggaagcatcatcctcactgctggaagcatc 9136
Query: 347 gtcctcaccagagccttcatcatcagtttccgcatctcttttcctcttttggggcacagt 406
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9135 gtcctcaccagagccttcatcatcagtttccgcatctcttttcctcttttggggcacagt 9076
Query: 407 gggttcttttatttgtgtgacttcagctgttagtacattttcagtcaccttagtaggatc 466
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9075 gggttcttttatttgtgtgacttcagctgttagtacattttcagtcaccttagtaggatc 9016
Query: 467 aaaccttgcagcaaacatgttattgactggatgctatcgttatgctgtcgctatgctgtt 526
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9015 aaaccttgcagcaaacatgttattgactggatgctatcgttatgctgtcgctatgctgtt 8956
Query: 527 actgaccttctaaattcctgaagctcatcgcatcatattacatctcatcgccattcgtct 586
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8955 actgaccttctaaattcctgaagctcatcgcatcatattacatctcatcgccattcgtct 8896
Query: 587 attattttatttcagaacggaattcataaaaaatttcaatctgtaaaacttgaaataacg 646
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8895 attattttatttcagaacggaattcataaaaaatttcaatctgtaaaacttgaaataacg 8836
Query: 647 acaagatataatagagttaagtcactaccatgatatcagtcagccaaaggttccagcagt 706
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8835 acaagatataatagagttaagtcactaccatgatatcagtcagccaaaggttccagcagt 8776
Query: 707 tagacaaatatctcgcgtctacgataacactcataacgtcataaaatgttcccgtcattg 766
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8775 tagacaaatatctcgcgtctacgataacactcataacgtcataaaatgttcccgtcattg 8716
Query: 767 agattactatcacgttctgtatggaaaggtccaaatatagtcccattaccaataatagaa 826
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 8715 agattactatcacgttctgtatggaaaggtccaaatatagtcccattaccaataaaagaa 8656
Query: 827 gcattggccaaaggtacgcccattagaacaaatgccagatctgccaccatattaccctca 886
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 8655 gcattggccaaaggtacgcccattagaacaaatgccagatctgccaccatattacctcaa 8596
Query: 887 tttgttcgactgaaatttc-agtgcataat 915
||||| |||||||||| | ||||||||||
Sbjct: 8595 tttgtcggactgaaattccaagtgcataat 8566
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6040
Number of Sequences: 1807
Number of extensions: 6040
Number of successful extensions: 48
Number of sequences better than 1.0e-20: 1
length of query: 915
length of database: 10,358,551
effective HSP length: 16
effective length of query: 899
effective length of database: 10,329,639
effective search space: 9286345461
effective search space used: 9286345461
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)