BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC37ZG01RM1.SCF screened BAC_end
(935 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1726 1195 0.0
>3x_Contig1726
Length = 20144
Score = 1195 bits (603), Expect = 0.0
Identities = 697/717 (97%), Gaps = 9/717 (1%)
Strand = Plus / Minus
Query: 161 ctataaaccggccttaaaggttatgaaggaaggtttgtataaattggcttcaattcgtga 220
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 20144 ctataaaccggccttaaaggttataaaggaaggtttgtataaattggcttcaattcgtga 20085
Query: 221 ccagagttgtgttggcaagatcgtagatccgaaccatactttccaagtaagttatctcaa 280
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20084 ccagagttgtgttggcaagatcgtagatccgaaccatactttccaagtaagttatctcaa 20025
Query: 281 aaaacctacgtactcattaattgagcacaacagaatctcaaaactggacgatttcaacta 340
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20024 aaaacctacgtactcattaattgagcacaacagaatctcaaaactggacgatttcaacta 19965
Query: 341 cattaaaaatgatgtctgccaagggtttgaagaaaccatcgatatgtctctaaacggcat 400
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19964 cattaaaaatgatgtctgccaagggtttgaagaaaccatcgatatgtctctaaacggcat 19905
Query: 401 accaccctttttgatagaatatgatatgatttcaccgttaggagagcttatctcatcttc 460
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19904 accaccctttttgatagaatatgatatgatttcaccgttaggagagcttatctcatcttc 19845
Query: 461 agtgcaagttgctacgaagtatgcttcaattaaattccctaatgaagtcgttggtgaata 520
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19844 agtgcaagttgctacgaagtatgcttcaattaaattccctaatgaagtcgttggtgaata 19785
Query: 521 tgtgataaagattaagaatgtatatgattccaattatgggaaggctgacctccaaaaact 580
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19784 tgtgataaagattaagaatgtatatgattccaattatgggaaggctgacctccaaaaact 19725
Query: 581 tgcgtacaaaccttctcaactttcgantagacagaaatgt-aactcacttccagaaatag 639
|||||||||||||||||||||||||| |||||| ||||| |||||||||||||||||||
Sbjct: 19724 tgcgtacaaaccttctcaactttcgataagacag-aatgtaaactcacttccagaaatag 19666
Query: 640 aattcttagagaaaggaagcacctacagaacctgcntccgc-aacatagagcaatcanag 698
||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||| ||
Sbjct: 19665 aattcttagagaaaggaagcacctacagaacctgc-tccgcaaacatagagcaatcaaag 19607
Query: 699 ctaatgcaggatatcaaacctgaggtgcctcatggctcagctcctttctctgtttcgttc 758
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 19606 ctaatgcaggatatcaaactgaaggtgcctcatggctcagctcctttctctgtttcgttc 19547
Query: 759 agtatttatcacgaaagttcttcg-aaacagattctttcaccatgcattatattaccgct 817
|||||||||||||||||||||||| ||||||||||||||||||||||| ||||||| ||
Sbjct: 19546 agtatttatcacgaaagttcttcgaaaacagattctttcaccatgcataatattacggc- 19488
Query: 818 tgct-actttgattacaaacgattgttttgatggcctcttgtttgggaaatcattta 873
|||| |||||||||||||||||||| | ||||||||||| | |||||||||||||||
Sbjct: 19487 tgctaactttgattacaaacgattg-tatgatggcctctcg-ttgggaaatcattta 19433
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6260
Number of Sequences: 1807
Number of extensions: 6260
Number of successful extensions: 41
Number of sequences better than 1.0e-20: 1
length of query: 935
length of database: 10,358,551
effective HSP length: 16
effective length of query: 919
effective length of database: 10,329,639
effective search space: 9492938241
effective search space used: 9492938241
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)