BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC37ZG02RM1.SCF screened BAC_end
(909 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1785 1550 0.0
>3x_Contig1785
Length = 37935
Score = 1550 bits (782), Expect = 0.0
Identities = 835/848 (98%), Gaps = 4/848 (0%)
Strand = Plus / Plus
Query: 48 taacgtacaaaactacattttctgaaagcgtggggaaacaatagagaacatattgcatta 107
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9502 taacgtacaaaactacattttctgaaagcgtggggaaacaatagagaacatattgcatta 9561
Query: 108 agaggccggaataaaaggtttagtacggagattaacatgtgcatagaggattttcgttct 167
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9562 agaggccggaataaaaggtttagtacggagattaacatgtgcatagaggattttcgttct 9621
Query: 168 aacttttaaacgatggaacatagatcaagtaacatagtaattggacctcataacttgaca 227
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9622 aacttttaaacgatggaacatagatcaagtaacatagtaattggacctcataacttgaca 9681
Query: 228 acagggataaactatattacttgatatcacttgtcgcacatggattcaacaatcggtctc 287
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9682 acagggataaactatattacttgatatcacttgtcgcacatggattcaacaatcggtctc 9741
Query: 288 tgatagattaagggttgcgtctttgtctgtattcgaaaacgaattaaatgtagttatagg 347
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9742 tgatagattaagggttgcgtctttgtctgtattcgaaaacgaattaaatgtagttatagg 9801
Query: 348 taaatagttagttatatctagagaaatactcgtacatccatagtcaggccatccaccaaa 407
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9802 taaatagttagttatatctagagaaatactcgtacatccatagtcaggccatccaccaaa 9861
Query: 408 atagtttcttttcagttttttttgtttttccgctttgcatttaaatgccaattgaaccat 467
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9862 atagtttcttttcagttttttttgtttttccgctttgcatttaaatgccaattgaaccat 9921
Query: 468 tgaaaagggatgtcttaaaggaaatgaaagaaaggggagccttaaccaccttgaatgaag 527
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9922 tgaaaagggatgtcttaaaggaaatgaaagaaaggggagccttaaccaccttgaatgaag 9981
Query: 528 aattgtgaaagtttcagatacaattgttacaattgttcaaggccaacctatcaaatataa 587
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9982 aattgtgaaagtttcagatacaattgttacaattgttcaaggccaacctatcaaatataa 10041
Query: 588 tagcagttaattgattgactattttaacttgaaaggaagctatatatatttttaagggcc 647
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10042 tagcagttaattgattgactattttaacttgaaaggaagctatatatatttttaagggcc 10101
Query: 648 ttgcaagcggttntttagactaagaattagaatagataagcccagatgggttccggtact 707
|||||||||||| |||||||||||||| |||| ||||||||| |||||||||||||||||
Sbjct: 10102 ttgcaagcggttttttagactaagaataagaaaagataagccaagatgggttccggtact 10161
Query: 708 gctagaagacctagcttgagcactttcacatccaatgacatgatggttgacgagcctcat 767
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 10162 gctagaagacctagcttgagcacttccacatccaatgacatgatggttgacgagcctcat 10221
Query: 768 ggtgtgcctcgtctttcccgtcgtttgactgggtttttgcctcagg-aattaagagt-tt 825
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||
Sbjct: 10222 ggtgtgcctcgtctttcccgtcgtttgactgggtttttgcctcaggaaattaagagtatt 10281
Query: 826 tatactatgatttctttgcagagtagagaaatttgg-aaaatcatggngtttaagaagtt 884
||||||||||| ||||||||||||||||||||||| |||| ||||| | ||||||||||
Sbjct: 10282 aatactatgattcctttgcagagtagagaaatttggaaaaaacatgggg-ttaagaagtt 10340
Query: 885 tgaaaccc 892
||||||||
Sbjct: 10341 tgaaaccc 10348
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7421
Number of Sequences: 1807
Number of extensions: 7421
Number of successful extensions: 69
Number of sequences better than 1.0e-20: 1
length of query: 909
length of database: 10,358,551
effective HSP length: 16
effective length of query: 893
effective length of database: 10,329,639
effective search space: 9224367627
effective search space used: 9224367627
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)