BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC37ZG03FM1.SCF screened BAC_end
(938 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1748 1304 0.0
>3x_Contig1748
Length = 22566
Score = 1304 bits (658), Expect = 0.0
Identities = 816/856 (95%), Gaps = 11/856 (1%)
Strand = Plus / Plus
Query: 86 tgcccgatagagctccatatgaagttacgttcgatggtccaaatgatcctctacatcctt 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16239 tgcccgatagagctccatatgaagttacgttcgatggtccaaatgatcctctacatcctt 16298
Query: 146 tcaactggcctttgaagaagaaacttgtgatctgtataatgttgggtcttgactgtattg 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16299 tcaactggcctttgaagaagaaacttgtgatctgtataatgttgggtcttgactgtattg 16358
Query: 206 ccatcaccatgggttcctctatctttgcatctgcagttaccactatttctgaaatatatg 265
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16359 ccatcaccatgggttcctctatctttgcatctgcagttaccactatttctgaaatatatg 16418
Query: 266 aagttgccaacgtcgtttctattcttggtattactttatatgtccttggtttcgcagctt 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16419 aagttgccaacgtcgtttctattcttggtattactttatatgtccttggtttcgcagctt 16478
Query: 326 ccccagttatttacgctccattatcggaattatatggtagacaaggtgtgctattgattg 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16479 ccccagttatttacgctccattatcggaattatatggtagacaaggtgtgctattgattg 16538
Query: 386 cttcgtttggtttcgctttgttccagtttgctgtagctactgcagaaaatttacaaacta 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16539 cttcgtttggtttcgctttgttccagtttgctgtagctactgcagaaaatttacaaacta 16598
Query: 446 ttttgatttgtagatttttcggtggttttatcggtgctgcaccattagctgtggtgccgg 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16599 ttttgatttgtagatttttcggtggttttatcggtgctgcaccattagctgtggtgccgg 16658
Query: 506 cttctttctccgatatgtttgacaatacacaaagaggtactgccgttactatgtttgcct 565
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16659 cttctttctccgatatgtttgacaatacacaaagaggtactgccgttactatgtttgcct 16718
Query: 566 tgggtgtcttcgtcggtccaatcttggctccagtgttcggttcttacattgtgncataca 625
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 16719 tgggtgtcttcgtcggtccaatcttggctccagtgttcggttcttacattgtgcaataca 16778
Query: 626 cctcttggagatggactgaatacgttactggtatttttgcttctgtcatttttgtcctgt 685
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16779 cctcttggagatggactgaatacgttactggtatttttgcttctgtcatttttgtcctgt 16838
Query: 686 tatgctatttctttggagatactcatcacccaactattttgggtaattaagccaagatga 745
||||||||||||||| ||| |||||||||||||||||||||| |||| ||||||||||||
Sbjct: 16839 tatgctatttctttgaagaaactcatcacccaactattttggttaataaagccaagatga 16898
Query: 746 tgaggaaagagactggttattggggggtat-cacgcagctcatggaagaa-tcgaactct 803
|||| || |||||||| ||| ||||||| |||||||||||| |||||| |||||||||
Sbjct: 16899 tgagaaagaagactggtaatt--ggggtatccacgcagctcat-gaagaagtcgaactct 16955
Query: 804 tcatcaaaaaagtttgtccaaagtacattacccaga-caatttacctgttgttcactgga 862
||||||| | ||||||| |||| || | ||||| |||| ||| |||||||||||| |
Sbjct: 16956 ccatcaaagatgtttgtcaaaag-actatcaccagaccaatctacatgttgttcactgaa 17014
Query: 863 cc-attttttttttgattaccgggttccaact-tttcgtttacggaattttatttttact 920
|| ||| |||| |||||||||| | | ||||| |||||||||||| ||| ||| ||||||
Sbjct: 17015 ccaattattttcttgattaccgtg-tacaactctttcgtttacggtattctatatttact 17073
Query: 921 a-tggaagccttccca 935
| ||||||||| ||||
Sbjct: 17074 attggaagcctaccca 17089
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7641
Number of Sequences: 1807
Number of extensions: 7641
Number of successful extensions: 38
Number of sequences better than 1.0e-20: 1
length of query: 938
length of database: 10,358,551
effective HSP length: 16
effective length of query: 922
effective length of database: 10,329,639
effective search space: 9523927158
effective search space used: 9523927158
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)