BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC37ZG03RM1.SCF screened BAC_end
(936 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1604 1372 0.0
>3x_Contig1604
Length = 15703
Score = 1372 bits (692), Expect = 0.0
Identities = 846/878 (96%), Gaps = 15/878 (1%)
Strand = Plus / Minus
Query: 42 gcttcttcgtcatatctaccaaactttgtagtagaatttgaagggttaagcgcaaccgct 101
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14480 gcttcttcgtcatatctaccaaactttgtagtagaatttgaagggttaagcgcaaccgct 14421
Query: 102 gtaactattccttctagtcgtctttttgtttcttgtaattcttggtcctttctctttaat 161
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14420 gtaactattccttctagtcgtctttttgtttcttgtaattcttggtcctttctctttaat 14361
Query: 162 gaatctgataacttacaaaatattatttccagggatgccggtatctggatttcagaatcg 221
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14360 gaatctgataacttacaaaatattatttccagggatgccggtatctggatttcagaatcg 14301
Query: 222 aaagtaagagcctttgatttcttcattttctgctcttcttgctgcttgaaagtcaaaccc 281
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14300 aaagtaagagcctttgatttcttcattttctgctcttcttgctgcttgaaagtcaaaccc 14241
Query: 282 tgattgaatacctccttcaatttttttatctctatttctaacgattctatctgtgtctct 341
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14240 tgattgaatacctccttcaatttttttatctctatttctaacgattctatctgtgtctct 14181
Query: 342 ttcaactgtagttcaagtttgaagttgtctgatgatggctctgtttcagagtcgaaagtg 401
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14180 ttcaactgtagttcaagtttgaagttgtctgatgatggctctgtttcagagtcgaaagtg 14121
Query: 402 gtattgaatcctgagcttttagcatatgatgatctgtccattattaccgtgttatttgaa 461
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14120 gtattgaatcctgagcttttagcatatgatgatctgtccattattaccgtgttatttgaa 14061
Query: 462 gagcttccaggatgcgtgtttgacgaaatgcctct-cgaggactctat-ctcgggcgaat 519
||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||
Sbjct: 14060 gagcttccaggatgcgtgtttgacgaaatgcctctgcgaggactctatgctcgggcgaat 14001
Query: 520 tatgttgttctatgagcggctgttcccaata-tgatgacatgc-tgctccta-tgagtag 576
||||||||||||||||||||||||||||||| ||||||||||| |||||||| |||||||
Sbjct: 14000 tatgttgttctatgagcggctgttcccaatagtgatgacatgcgtgctcctagtgagtag 13941
Query: 577 atgatccgctcaaatggccctgaagtccttggttatagtgggagcccataccatcaatgt 636
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13940 aagatccgctcaaatggccctgaagtccttggttatagtgggagcccataccatcaatgt 13881
Query: 637 tcccatgtaagctgaagctacctnccatgt-gccatgctgnagttcatgacattgncggt 695
||||||||||||||||||||||| |||||| ||||||||| |||||||||||||| ||||
Sbjct: 13880 tcccatgtaagctgaagctacct-ccatgtggccatgctggagttcatgacattggcggt 13822
Query: 696 tgtgccatacattttggactcgtcagaactaccaaatttcagattggcgatagagttatc 755
||||||||||| |||||||||||||||||||||||| ||||||||||||| |||||||||
Sbjct: 13821 tgtgccatacaatttggactcgtcagaactaccaaaattcagattggcgaaagagttatc 13762
Query: 756 caaactctgtttggtataattcaggttgctacaccgat-acattgacccgtttagtaaaa 814
||||||||||| | ||| ||||||||||||||| |||| ||||||||| | |||||||||
Sbjct: 13761 caaactctgttggttat-attcaggttgctaca-cgataacattgacctg-ttagtaaaa 13705
Query: 815 -gttaattatgagttagaaacatttaatagtctaattttggttgtttccatggttcatag 873
|||||||||||||||||||||||| ||||||| | |||||||| ||||||| |||||||
Sbjct: 13704 ggttaattatgagttagaaacattt-atagtctcaatttggttg-ttccatgtttcatag 13647
Query: 874 aaaacaagggccagaacgaaacagtttggattaaaaat 911
||||| |||| |||| |||||||| | ||||||||||
Sbjct: 13646 aaaac-agggacagacagaaacagtattgattaaaaat 13610
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6953
Number of Sequences: 1807
Number of extensions: 6953
Number of successful extensions: 53
Number of sequences better than 1.0e-20: 1
length of query: 936
length of database: 10,358,551
effective HSP length: 16
effective length of query: 920
effective length of database: 10,329,639
effective search space: 9503267880
effective search space used: 9503267880
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)