BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC37ZG04FM1.SCF screened BAC_end
(947 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1400 924 0.0
>3x_Contig1400
Length = 8536
Score = 924 bits (466), Expect = 0.0
Identities = 740/807 (91%), Gaps = 21/807 (2%)
Strand = Plus / Plus
Query: 87 acgaatgtcagggtttcacagctctgtagattaccataattagataacaatgtgttttca 146
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 4520 acgaatgtcagggtttcacagc-ctgtagattaccataattagataacaatgtgttttca 4578
Query: 147 acgttttttaacatatatatgtactatttcccaaattatataggtatatgcttgactgga 206
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 4579 acgttttttaacatatatatgta-tatttcccaaattatataggtatatgcttgactgga 4637
Query: 207 aaagaaatcgcataaataacgagaccttcaaaatcggaacgaaccatacatggattcttt 266
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4638 aaagaaatcgcagaaataacgagaccttcaaaatcggaacgaaccatacatggattcttt 4697
Query: 267 tcattttgcttcaagaatcatgtacttgcttctgcaactgttctatcagtagatctttgg 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4698 tcattttgcttcaagaatcatgtacttgcttctgcaactgttctatcagtagatctttgg 4757
Query: 327 actgcagttgcgtcttcagctcatttatttgaagggcgagttcgttaggagatggcttta 386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4758 actgcagttgcgtcttcagctcatttatttgaagggcgagttcgttaggagatggcttta 4817
Query: 387 taccatgttggcataataaattctgatcttctgcaatgaaacgtttgagcctttcttcgt 446
||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 4818 taccatgttggtataataaattctgttcttctgcaatgaaacgtttgagcctttcttcgt 4877
Query: 447 tcaaatgttgaatcaactcaacaatctttgacgattttttccttaattccgtttcgaaat 506
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4878 tcaaattttgaatcaactcaacaatctttgacgattttttccttaattccgtttcgaaat 4937
Query: 507 ccactagaagaagagcctgatgtgactctggttccttccgatactttgattctagttcac 566
||| |||| |||||||||| ||||||||||||||||| ||| ||||||||||| |||||
Sbjct: 4938 ccagtagagaaagagcctgaggtgactctggttccttcggattctttgattctaattcac 4997
Query: 567 tttctaatcta-cttcccttgcgatagacttcgctaatcccgtggaaa-caatagctagc 624
||||||||||| |||||||||||||||||| |||||| ||||||||| |||| | ||||
Sbjct: 4998 tttctaatctaccttcccttgcgatagactcggctaattccgtggaaaccaattg-tagc 5056
Query: 625 tc-tgcatcaacatcataattttgnttncaaaatattcaaatgcatcttcagtgatcaac 683
|| |||||||||||||| |||||| || |||||||||||||| | |||||||||||||||
Sbjct: 5057 tcttgcatcaacatcat-attttg-tttcaaaatattcaaatac-tcttcagtgatcaac 5113
Query: 684 aagggggtggttggggagtctttttcagtagcaaaagaagggctttattggtcaccgcgg 743
| ||||| ||| |||| || ||||||| ||||||||| || |||| | || |||||
Sbjct: 5114 a--ggggttgtttggga-tccttttcagaagcaaaagatgg--cttatatggcaacgcgg 5168
Query: 744 aaataggatcatcccttcagttttacatagtccttcctaaggacaaggaactttcctgta 803
||||||| ||| ||||| |||||||||| | ||| || | ||||||| || ||||||||
Sbjct: 5169 aaataggttca-gccttctgttttacata-ttctttctcaagacaaggcac-ttcctgta 5225
Query: 804 ttttctgtgcctttaccaataattcatggacttacgaattgccaaggttggatccggcaa 863
| ||||||| || |||||||| |||| |||||||||||| ||| ||| |||| | |||
Sbjct: 5226 -tctctgtgctttcaccaataa-tcatcgacttacgaatttgcaaagtt-gatctgtcaa 5282
Query: 864 aagtcctttaccttattactatattgg 890
| || |||| |||||||||||||||||
Sbjct: 5283 atgt-cttttccttattactatattgg 5308
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6743
Number of Sequences: 1807
Number of extensions: 6743
Number of successful extensions: 47
Number of sequences better than 1.0e-20: 1
length of query: 947
length of database: 10,358,551
effective HSP length: 16
effective length of query: 931
effective length of database: 10,329,639
effective search space: 9616893909
effective search space used: 9616893909
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)