BLASTN 2.2.3 [May-13-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= FJ0AC37ZG04RM1.SCF screened BAC_end (901 letters) Database: Klactis 3X assemblage 11/02 1807 sequences; 10,358,551 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value 3x_Contig1490 987 0.0 >3x_Contig1490 Length = 9411 Score = 987 bits (498), Expect = 0.0 Identities = 608/629 (96%), Gaps = 12/629 (1%) Strand = Plus / Minus Query: 49 ttaaattaccgttgggactgacgttcatggctacgtaaaatagaaaattgtaagtacgtc 108 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 753 ttaaattaccgttgggactgacgttcatggctacgtaaaatagaaaattgtaagtacgtc 694 Query: 109 cttattgttagttgaatactatatcaaacaaccagctatcccagcatgttgcttacggca 168 ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct: 693 cttattgttagttgaatactagatcaaacaaccagctatcccagcatgttgcttacggca 634 Query: 169 atgtataagctgtgtggggattgtaaagctacttaaaattcactctgctctaagctagag 228 ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 633 atgtagaagctgtgtggggattgtaaagctacttaaaattcactctgctctaagctagag 574 Query: 229 tccggaaccgtgatagctagaacattaccggatttttctggaagactctcgaaagtgcat 288 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 573 tccggaaccgtgatagctagaacattaccggatttttctggaagactctcgaaagtgcat 514 Query: 289 gtccacaaagaaaaccgaagaaaaaaactggaacaagtggatcaccatcacgtgatagat 348 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 513 gtccacaaagaaaaccgaagaaaaaaactggaacaagtggatcaccatcacgtgatagat 454 Query: 349 tttgaaatttaacgctaggtttttggaacgcacttctgtttcgatgtcaggcgtcagttt 408 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 453 tttgaaatttaacgctaggtttttggaacgcacttctgtttcgatgtcaggcgtcagttt 394 Query: 409 tgtaattcacgttaattaagacaatatcattggcattgtgtcaagttttggatagcaaca 468 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 393 tgtaattcacgttaattaagacaatatcattggcattgtgtcaagttttggatagcaaca 334 Query: 469 tattattattttccttgtaagatctacatatgtatagctagatatgtcagctcatgtgcg 528 |||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||| Sbjct: 333 tattattattttccttgtaagatctacatatgtataactagatattccagctcatgtgcg 274 Query: 529 tgatgatctttcgttcttg-atcaaatgaac-aggacatc-tgaaanc-ataat-gagcc 583 ||||||||||||||| ||| ||||||| ||| |||||||| ||||| | ||||| ||||| Sbjct: 273 tgatgatctttcgtttttgaatcaaattaacaaggacatcatgaaagcaataatggagcc 214 Query: 584 tatggacg-agttctcttcc-attat-agcatcattta-ggcagtag-atgatcagtctc 638 |||||||| ||||||||||| ||||| ||||||||||| |||||||| |||||||||||| Sbjct: 213 tatggacgaagttctcttccaattataagcatcatttagggcagtagaatgatcagtctc 154 Query: 639 a-tgccatt-tagggaccgtcatctgttt 665 | ||||||| ||| ||||||||||||||| Sbjct: 153 agtgccattgtagtgaccgtcatctgttt 125 Database: Klactis 3X assemblage 11/02 Posted date: Nov 27, 2002 12:23 PM Number of letters in database: 10,358,551 Number of sequences in database: 1807 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 7053 Number of Sequences: 1807 Number of extensions: 7053 Number of successful extensions: 56 Number of sequences better than 1.0e-20: 1 length of query: 901 length of database: 10,358,551 effective HSP length: 16 effective length of query: 885 effective length of database: 10,329,639 effective search space: 9141730515 effective search space used: 9141730515 T: 0 A: 40 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 50 (99.6 bits)