BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC37ZG04RM1.SCF screened BAC_end
         (901 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig1490                                                         987   0.0  

>3x_Contig1490 
          Length = 9411

 Score =  987 bits (498), Expect = 0.0
 Identities = 608/629 (96%), Gaps = 12/629 (1%)
 Strand = Plus / Minus

                                                                       
Query: 49  ttaaattaccgttgggactgacgttcatggctacgtaaaatagaaaattgtaagtacgtc 108
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 753 ttaaattaccgttgggactgacgttcatggctacgtaaaatagaaaattgtaagtacgtc 694

                                                                       
Query: 109 cttattgttagttgaatactatatcaaacaaccagctatcccagcatgttgcttacggca 168
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 693 cttattgttagttgaatactagatcaaacaaccagctatcccagcatgttgcttacggca 634

                                                                       
Query: 169 atgtataagctgtgtggggattgtaaagctacttaaaattcactctgctctaagctagag 228
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 633 atgtagaagctgtgtggggattgtaaagctacttaaaattcactctgctctaagctagag 574

                                                                       
Query: 229 tccggaaccgtgatagctagaacattaccggatttttctggaagactctcgaaagtgcat 288
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 573 tccggaaccgtgatagctagaacattaccggatttttctggaagactctcgaaagtgcat 514

                                                                       
Query: 289 gtccacaaagaaaaccgaagaaaaaaactggaacaagtggatcaccatcacgtgatagat 348
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 513 gtccacaaagaaaaccgaagaaaaaaactggaacaagtggatcaccatcacgtgatagat 454

                                                                       
Query: 349 tttgaaatttaacgctaggtttttggaacgcacttctgtttcgatgtcaggcgtcagttt 408
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 453 tttgaaatttaacgctaggtttttggaacgcacttctgtttcgatgtcaggcgtcagttt 394

                                                                       
Query: 409 tgtaattcacgttaattaagacaatatcattggcattgtgtcaagttttggatagcaaca 468
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 393 tgtaattcacgttaattaagacaatatcattggcattgtgtcaagttttggatagcaaca 334

                                                                       
Query: 469 tattattattttccttgtaagatctacatatgtatagctagatatgtcagctcatgtgcg 528
           |||||||||||||||||||||||||||||||||||| ||||||||  |||||||||||||
Sbjct: 333 tattattattttccttgtaagatctacatatgtataactagatattccagctcatgtgcg 274

                                                                       
Query: 529 tgatgatctttcgttcttg-atcaaatgaac-aggacatc-tgaaanc-ataat-gagcc 583
           ||||||||||||||| ||| ||||||| ||| |||||||| ||||| | ||||| |||||
Sbjct: 273 tgatgatctttcgtttttgaatcaaattaacaaggacatcatgaaagcaataatggagcc 214

                                                                       
Query: 584 tatggacg-agttctcttcc-attat-agcatcattta-ggcagtag-atgatcagtctc 638
           |||||||| ||||||||||| ||||| ||||||||||| |||||||| ||||||||||||
Sbjct: 213 tatggacgaagttctcttccaattataagcatcatttagggcagtagaatgatcagtctc 154

                                        
Query: 639 a-tgccatt-tagggaccgtcatctgttt 665
           | ||||||| ||| |||||||||||||||
Sbjct: 153 agtgccattgtagtgaccgtcatctgttt 125


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7053
Number of Sequences: 1807
Number of extensions: 7053
Number of successful extensions: 56
Number of sequences better than 1.0e-20: 1
length of query: 901
length of database: 10,358,551
effective HSP length: 16
effective length of query: 885
effective length of database: 10,329,639
effective search space: 9141730515
effective search space used: 9141730515
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)