BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC37ZG05FM1.SCF screened BAC_end
(913 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1186 1562 0.0
>3x_Contig1186
Length = 4633
Score = 1562 bits (788), Expect = 0.0
Identities = 823/831 (99%), Gaps = 3/831 (0%)
Strand = Plus / Plus
Query: 85 ctcaatgctagaggaaccactctagtttttagcattgcttaaagaaggttttcgactgag 144
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2348 ctcaatgctagaggaaccactctagtttttagcattgcttaaagaaggttttcgactgag 2407
Query: 145 ttcgttaacctttcagtggaacagagacgaagtgtaaccaagaaagaatatacacagtgg 204
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2408 ttcgttaacctttcagtggaacagagacgaagtgtaaccaagaaagaatatacacagtgg 2467
Query: 205 aaacagatataaaaacccacttataacttatatatatggggaaagtagaacaaaagcaga 264
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2468 aaacagatataaaaacccacttataacttatatatatggggaaagtagaacaaaagcaga 2527
Query: 265 tgagagaagtgcttcatagaaggatggaacggtggatcaaaggtttgaatggtgtagctg 324
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2528 tgagagaagtgcttcatagaaggatggaacggtggatcaaaggtttgaatggtgtagctg 2587
Query: 325 agtcatattgagagtgaaaaaaaaaaattctttttccaattcaggtcatcgcgaacgagc 384
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2588 agtcatattgagagtgaaaaaaaaaaattctttttccaattcaggtcatcgcgaacgagc 2647
Query: 385 gaaacagggccgaaacggtataaactggattgataaactggacacctttgtccagatgct 444
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2648 gaaacagggccgaaacggtataaactggattgataaactggacacctttgtccagatgct 2707
Query: 445 tactcgtgatgtggaccaacggaggttaattgatattctcttaattctcctggctacgga 504
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2708 tactcgtgatgtggaccaacggaggttaattgatattctcttaattctcctggctacgga 2767
Query: 505 tggggtgtcagttctatgggggaagaagatatataaatattgtttttaaggctatatatc 564
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2768 tggggtgtcagttctatgggggaagaagatatataaatattgtttttaaggctatatatc 2827
Query: 565 ttatggatatataatgtagcagtaaatcggatagggaaaggctagctttcttcttcctag 624
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2828 ttatggatatataatgtagcagtaaatcggatagggaaaggctagctttcttcttcctag 2887
Query: 625 ttgaatgatgatttaaattcggagtccaatctcttgtgaacagcttcaatgaactcttcg 684
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2888 ttgaatgatgatttaaattcggagtccaatctcttgtgaacagcttcaatgaactcttcg 2947
Query: 685 gtagtgacgtatgatgatctgtcggtcttacccaagatcaatgccaaatctttagtcata 744
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2948 gtagtgacgtatgaggatctgtcggtcttacccaagatcaatgccaaatctttagtcata 3007
Query: 745 atttcatcttcttgaaccgtgttgacggtagcagattccaccaattcggcgaatttcacc 804
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3008 atttcatcttcttgaaccgtgttgacggtagcagattccaccaattcggcgaatttcacc 3067
Query: 805 acatctggggtgctatccaacttacccctttggatcaagcctctggtccaagcgaaattc 864
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 3068 acatctggggtgctatccaacttacccctttggatcaagcctctggtccaagcgaaaatc 3127
Query: 865 ga-gcgatcgattttgtccgaggtttc-ttaccccgntggtgttgtctgta 913
|| |||||||| ||||| ||||||||| |||||| | ||||||||||||||
Sbjct: 3128 gaggcgatcgagtttgt-cgaggtttctttaccctgttggtgttgtctgta 3177
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 11,910
Number of Sequences: 1807
Number of extensions: 11910
Number of successful extensions: 91
Number of sequences better than 1.0e-20: 1
length of query: 913
length of database: 10,358,551
effective HSP length: 16
effective length of query: 897
effective length of database: 10,329,639
effective search space: 9265686183
effective search space used: 9265686183
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)