BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC37ZG05RM1.SCF screened BAC_end
(915 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig917 1542 0.0
>3x_Contig917
Length = 3433
Score = 1542 bits (778), Expect = 0.0
Identities = 853/870 (98%), Gaps = 6/870 (0%)
Strand = Plus / Minus
Query: 48 acagataacttgatcagaggtcagactgttcagtactaattcggtctttgttaatctagc 107
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2390 acagataacttgatcagaggtcagactgttcagtactaattcggtctttgttaatctagc 2331
Query: 108 tcatcgacttttaatattttcatacatatatataaaaatatacgtatgctatatataata 167
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2330 tcatcgacttttaatattttcatacatatatataaaaatatacgtatgctatatataata 2271
Query: 168 acaaagtaacaagcaaaaccccaagcccaaacccacggacaggaatagggcccttacttc 227
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2270 acaaagtaacaagcaaaaccccaagcccaaacccacggacaggaatagggcccttacttc 2211
Query: 228 gtgcagaaggaacggaaaacttaaaaagattcatagttgaatatataacaaattgaaatc 287
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2210 gtgcagaaggaacggaaaacttaaaaagattcatagttgaatatataacaaattgaaatc 2151
Query: 288 tgtattccagacatggaatctgcgtaatgtctgagatcgctcgcagtctgcagaaagcca 347
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2150 tgtattccagacatggaatctgcgtaatgtctgagatcgctcgcagtctgcagaaagcca 2091
Query: 348 gaattgaaaattggtattaagcaaaaagaaatatagtgaaagtaccggtggagaacgaaa 407
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2090 gaattgaaaattggtattaagcaaaaagaaatatagtgaaagtaccggtggagaacgaaa 2031
Query: 408 agaagctaaggtagagaagtagaagtagctaaacaagatagtcgaaagctctgacaaaac 467
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2030 agaagctaaggtagagaagtagaagtagctaaacaagatagtcgaaagctctgacaaaac 1971
Query: 468 gatgatgatgggtcagaaacggagacgtctaggaaaagatgagattcggccggtaattgc 527
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1970 gatgatgatgggtcagaaacggagacgtctaggaaaagatgagattcggccggtaattgc 1911
Query: 528 tcaagcttgggacgttacctcatccagacagaagagagaaaggcattagcacggtctctt 587
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1910 tcaagcttgggacgttacctcatccagacagaagagagaaaggcattagcacggtctctt 1851
Query: 588 ggtgatattttcagaaaaaaaatccgccgctagaatatactgcctactagatcgagcatg 647
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1850 ggtgatattttcagaaaaaaaatccgccgctagaatatactgcctactagatcgagcatg 1791
Query: 648 agaaatgaaacacatttagaagaagaagaacaagataaggaagtaaattaaattctagat 707
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 1790 agaaatgaaacacatttagaagaagaagaacaagaaaaggaagtaaattaaattctagat 1731
Query: 708 ggacgacgggttcgaatggaccggacagtgggtaagtatgtcatgcagcgtggcagcagt 767
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 1730 ggacgacgggttcgaatggaccggacagtgggtaagtatgtcaggcagcgtggcagcagt 1671
Query: 768 cagtacgggattaattatgatacccgaaga-tgtactgtgtagtaacaactgggcaggag 826
||||||||||| |||||||||||| ||||| |||||||||||||||||||||||||||||
Sbjct: 1670 cagtacgggataaattatgatacc-gaagaatgtactgtgtagtaacaactgggcaggag 1612
Query: 827 gaattatatacagggaataaaattagg-atacagagaaag-aaattcgctggctggctta 884
|||| ||| |||||| ||||||||| | |||||||||| |||| ||||||||||||||
Sbjct: 1611 gaataataacaagggaaaaaaattaggaaaacagagaaagaaaatccgctggctggctta 1552
Query: 885 c-tgcccagaatgaa-gttggcctgctgta 912
| ||||||| ||||| ||||||||||||||
Sbjct: 1551 catgcccaggatgaaggttggcctgctgta 1522
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8128
Number of Sequences: 1807
Number of extensions: 8128
Number of successful extensions: 95
Number of sequences better than 1.0e-20: 1
length of query: 915
length of database: 10,358,551
effective HSP length: 16
effective length of query: 899
effective length of database: 10,329,639
effective search space: 9286345461
effective search space used: 9286345461
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)