BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC37ZG06RM1.SCF screened BAC_end
(941 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1682 1451 0.0
>3x_Contig1682
Length = 16889
Score = 1451 bits (732), Expect = 0.0
Identities = 823/848 (97%), Gaps = 4/848 (0%)
Strand = Plus / Plus
Query: 49 aaacgtgtgaacccagatgaatgttccaccaggagcagcatctatggaggttttgttaaa 108
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7013 aaacgtgtgaacccagatgaatgttccaccaggagcagcatctatggaggttttgttaaa 7072
Query: 109 gtagccacatgctgcagcaacgatacaaccaaccaacaaaccaaggatgacagcacatga 168
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7073 gtagccacatgctgcagcaacgatacaaccaaccaacaaaccaaggatgacagcacatga 7132
Query: 169 tttcatgattggagcaccgtacttctcaaagatgataatagtggaaaacaccaagaaacc 228
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7133 tttcatgattggagcaccgtacttctcaaagatgataatagtggaaaacaccaagaaacc 7192
Query: 229 caaaccgacgaaacgggcagacccccagtcacctgccatgggagcaccttctgagggaca 288
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7193 caaaccgacgaaacgggcagacccccagtcacctgccatgggagcaccttctgagggaca 7252
Query: 289 aatggcaccaacacatcctgaaccaccggcccagtcgctgaaccctgatttgataagact 348
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7253 aatggcaccaacacatcctgaaccaccggcccagtcgctgaaccctgatttgataagact 7312
Query: 349 gaaagcgatacaaagaatgacgggacctgtgacaatctttggaaacaagctttgtaaaat 408
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7313 gaaagcgatacaaagaatgacgggacctgtgacaatctttggaaacaagctttgtaaaat 7372
Query: 409 attagccggagtgaaggacatagcaacttcgagcaaaccacaaacacaggcggtacccaa 468
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7373 attagccggagtgaaggacatagcaacttcgagcaaaccacaaacacaggcggtacccaa 7432
Query: 469 gatagcaccatatccatcatgacaagctaattgcgtgccatcttcggacactgggcaaaa 528
|||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 7433 gatagcaccatagccatcaggacaagctaattgcgtgccatcttcggacactgggcaaaa 7492
Query: 529 tcctgtatcatacatcatggggaaaacatttccgaccaaagtaatactagcgaatgaagt 588
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7493 tcctgtatcatacatcatggggaaaacatttccgaccaaagtaatactagcgaatgaagt 7552
Query: 589 acctagcacagaaataagaccagatcccacgtagtatgaatgtaatgggatagggactct 648
|||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||
Sbjct: 7553 acctagcacagaaataagaccagaacccacgtagtatgaagtaaatgggatagggactct 7612
Query: 649 tgtaatttgtatggctgacatgagactatgaacgatcaacgaagctgaaacccaatattc 708
|||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||
Sbjct: 7613 tgtaatttgtatggctgacatgagactagaaacgatcaacgaagctgaaaccaaatattc 7672
Query: 709 ttgaacactctgatcgaagtttatcattgnttgatatcaaaattggaggcgaaatgacac 768
||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 7673 ttgaacactctgatcgaggtttatcattg-ttgatatcaaaattggaggcgaaatgacac 7731
Query: 769 cagccaacatagacaccgagtggttgcaccccaggattcatacctagttcaacggggaac 828
||||||||||||||| ||||| |||||| |||| || ||||||||||| |||| ||||||
Sbjct: 7732 cagccaacatagacaacgagt-gttgcaacccaagaatcatacctagtacaac-gggaac 7789
Query: 829 gtcagcatttagtgaggaaaaacggttgatctttatgaacaagttcgaaacctttttccc 888
||||||||| ||||| |||||||||||||||| ||||||||||||||| |||| ||| ||
Sbjct: 7790 gtcagcattaagtga-gaaaaacggttgatctctatgaacaagttcgacacctcttttcc 7848
Query: 889 tggctaaa 896
| ||||||
Sbjct: 7849 ttgctaaa 7856
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5210
Number of Sequences: 1807
Number of extensions: 5210
Number of successful extensions: 42
Number of sequences better than 1.0e-20: 1
length of query: 941
length of database: 10,358,551
effective HSP length: 16
effective length of query: 925
effective length of database: 10,329,639
effective search space: 9554916075
effective search space used: 9554916075
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)