BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC37ZG07FM1.SCF screened BAC_end
(930 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1622 1499 0.0
3x_Contig1486 182 8e-46
3x_Contig1722 180 3e-45
3x_Contig1727 178 1e-44
3x_Contig1636 178 1e-44
3x_Contig905 101 2e-21
>3x_Contig1622
Length = 13445
Score = 1499 bits (756), Expect = 0.0
Identities = 827/846 (97%), Gaps = 4/846 (0%)
Strand = Plus / Plus
Query: 87 ctagtaaccatgacattttcaataagcttctaagcgtcacggtcatcatgaattgtcgaa 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4064 ctagtaaccatgacattttcaataagcttctaagcgtcacggtcatcatgaattgtcgaa 4123
Query: 147 tgatatattactcttgtgaaactattgaccacaaaacatgaccataactcaatataaata 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4124 tgatatattactcttgtgaaactattgaccacaaaacatgaccataactcaatataaata 4183
Query: 207 tctctccctgccagaaaatttttacagcatggttctttggttgtaaacattccacagaaa 266
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4184 tctctccctgccagaaaatttttacagcatggttctttggttgtaaacattccacagaaa 4243
Query: 267 ttaggcaacatggccgagcggttaaggcgaaagattagaaatcttttgggctctgcccgc 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4244 ttaggcaacatggccgagcggttaaggcgaaagattagaaatcttttgggctctgcccgc 4303
Query: 327 gcaggttcgagtcctgctgttgtcgttatttttttataagttagacttcttaacatttct 386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4304 gcaggttcgagtcctgctgttgtcgttatttttttataagttagacttcttaacatttct 4363
Query: 387 tttcttgtacaacgtgtgttggcaacaaatcacgctacataatatataccgcgtttgtgg 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4364 tttcttgtacaacgtgtgttggcaacaaatcacgctacataatatataccgcgtttgtgg 4423
Query: 447 ttcctagcagaggttttgttgaaataattcaaactgcttttttaccatctgatttgggag 506
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4424 ttcctagcagaggttttgttgaaataattcaaactgcttttttaccatctgatttgggag 4483
Query: 507 agcattactgtgagtattagctgttaattgtatccgattgcacgtgtttttgacaagcgt 566
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4484 agcattactgtgagtattagctgttaattgtatccgattgcacgtgtttttgacaagcgt 4543
Query: 567 aacattgataccccggggtagccgattttataaccataccagtatttcattcaataattt 626
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4544 aacattgataccccggggtagccgattttataaccataccagtatttcattcaataattt 4603
Query: 627 tagatatgtctgttctacggaggactattgatccaatagcatctctgtgcactccaggct 686
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4604 tagatatgtctgttctacggaggactattgatccaatagcatctctgtgcactccaggct 4663
Query: 687 tagtaacgaacaggagtcccttcttgttgaaactgtgtaatgtactggtcgatatattct 746
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4664 tagtaacgaacaggagtcccttcttgttgaaactgtgtaatgtactggtcgatatattct 4723
Query: 747 gattaaacatcttttcctacagaaattgggcaacatggccgagcggttaaagcgaaagat 806
|||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 4724 gattaaacatctcttcctacagaaattgggcaacatggccgagcggttaaggcgaaagat 4783
Query: 807 tag-aatcttttgggctctgcccgcgccagttcgaatcctgctgntggcgnaattttttt 865
||| ||||||||||||||||||||||| |||||| |||||||| || || ||||||||
Sbjct: 4784 tagaaatcttttgggctctgcccgcgcaggttcgagtcctgctgttgtcgtcattttttt 4843
Query: 866 g-ttaattaaaaactttttggtttt-aatgccgcaatagatttttaacgggttttaacat 923
| ||| ||||||||||||| ||||| ||||| |||||||| ||||||||| ||| ||||
Sbjct: 4844 gtttatttaaaaacttttttgttttaaatgcagcaataga-ttttaacggtgttttacat 4902
Query: 924 atttca 929
||||||
Sbjct: 4903 atttca 4908
>3x_Contig1486
Length = 12131
Score = 182 bits (92), Expect = 8e-46
Identities = 92/92 (100%)
Strand = Plus / Minus
Query: 269 aggcaacatggccgagcggttaaggcgaaagattagaaatcttttgggctctgcccgcgc 328
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11494 aggcaacatggccgagcggttaaggcgaaagattagaaatcttttgggctctgcccgcgc 11435
Query: 329 aggttcgagtcctgctgttgtcgttatttttt 360
||||||||||||||||||||||||||||||||
Sbjct: 11434 aggttcgagtcctgctgttgtcgttatttttt 11403
Score = 105 bits (53), Expect = 2e-22
Identities = 82/91 (90%), Gaps = 1/91 (1%)
Strand = Plus / Minus
Query: 775 ggcaacatggccgagcggttaaagcgaaagattag-aatcttttgggctctgcccgcgcc 833
|||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||
Sbjct: 11493 ggcaacatggccgagcggttaaggcgaaagattagaaatcttttgggctctgcccgcgca 11434
Query: 834 agttcgaatcctgctgntggcgnaatttttt 864
|||||| |||||||| || || |||||||
Sbjct: 11433 ggttcgagtcctgctgttgtcgttatttttt 11403
>3x_Contig1722
Length = 17718
Score = 180 bits (91), Expect = 3e-45
Identities = 91/91 (100%)
Strand = Plus / Minus
Query: 270 ggcaacatggccgagcggttaaggcgaaagattagaaatcttttgggctctgcccgcgca 329
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1721 ggcaacatggccgagcggttaaggcgaaagattagaaatcttttgggctctgcccgcgca 1662
Query: 330 ggttcgagtcctgctgttgtcgttatttttt 360
|||||||||||||||||||||||||||||||
Sbjct: 1661 ggttcgagtcctgctgttgtcgttatttttt 1631
Score = 105 bits (53), Expect = 2e-22
Identities = 82/91 (90%), Gaps = 1/91 (1%)
Strand = Plus / Minus
Query: 775 ggcaacatggccgagcggttaaagcgaaagattag-aatcttttgggctctgcccgcgcc 833
|||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||
Sbjct: 1721 ggcaacatggccgagcggttaaggcgaaagattagaaatcttttgggctctgcccgcgca 1662
Query: 834 agttcgaatcctgctgntggcgnaatttttt 864
|||||| |||||||| || || |||||||
Sbjct: 1661 ggttcgagtcctgctgttgtcgttatttttt 1631
>3x_Contig1727
Length = 17872
Score = 178 bits (90), Expect = 1e-44
Identities = 93/94 (98%)
Strand = Plus / Plus
Query: 268 taggcaacatggccgagcggttaaggcgaaagattagaaatcttttgggctctgcccgcg 327
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13281 taggcaacatggccgagcggttaaggcgaaagattagaaatcttttgggctctgcccgcg 13340
Query: 328 caggttcgagtcctgctgttgtcgttattttttt 361
|||||||||||||||||||||||||||| |||||
Sbjct: 13341 caggttcgagtcctgctgttgtcgttatcttttt 13374
Score = 103 bits (52), Expect = 6e-22
Identities = 71/76 (93%), Gaps = 1/76 (1%)
Strand = Plus / Plus
Query: 775 ggcaacatggccgagcggttaaagcgaaagattag-aatcttttgggctctgcccgcgcc 833
|||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||
Sbjct: 13283 ggcaacatggccgagcggttaaggcgaaagattagaaatcttttgggctctgcccgcgca 13342
Query: 834 agttcgaatcctgctg 849
|||||| ||||||||
Sbjct: 13343 ggttcgagtcctgctg 13358
>3x_Contig1636
Length = 15667
Score = 178 bits (90), Expect = 1e-44
Identities = 90/90 (100%)
Strand = Plus / Minus
Query: 270 ggcaacatggccgagcggttaaggcgaaagattagaaatcttttgggctctgcccgcgca 329
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6398 ggcaacatggccgagcggttaaggcgaaagattagaaatcttttgggctctgcccgcgca 6339
Query: 330 ggttcgagtcctgctgttgtcgttattttt 359
||||||||||||||||||||||||||||||
Sbjct: 6338 ggttcgagtcctgctgttgtcgttattttt 6309
Score = 103 bits (52), Expect = 6e-22
Identities = 71/76 (93%), Gaps = 1/76 (1%)
Strand = Plus / Minus
Query: 775 ggcaacatggccgagcggttaaagcgaaagattag-aatcttttgggctctgcccgcgcc 833
|||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||
Sbjct: 6398 ggcaacatggccgagcggttaaggcgaaagattagaaatcttttgggctctgcccgcgca 6339
Query: 834 agttcgaatcctgctg 849
|||||| ||||||||
Sbjct: 6338 ggttcgagtcctgctg 6323
>3x_Contig905
Length = 2723
Score = 101 bits (51), Expect = 2e-21
Identities = 84/95 (88%)
Strand = Plus / Minus
Query: 267 ttaggcaacatggccgagcggttaaggcgaaagattagaaatcttttgggctctgcccgc 326
||||||| ||||||||| ||||||||||| ||| | ||||||| |||||||||||||||
Sbjct: 1800 ttaggcactatggccgagtggttaaggcgacagacttgaaatctgttgggctctgcccgc 1741
Query: 327 gcaggttcgagtcctgctgttgtcgttattttttt 361
|| ||||| | |||||||| |||||||||||||||
Sbjct: 1740 gctggttcaaatcctgctggtgtcgttattttttt 1706
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6506
Number of Sequences: 1807
Number of extensions: 6506
Number of successful extensions: 67
Number of sequences better than 1.0e-20: 6
length of query: 930
length of database: 10,358,551
effective HSP length: 16
effective length of query: 914
effective length of database: 10,329,639
effective search space: 9441290046
effective search space used: 9441290046
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)