BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC37ZG07RM1.SCF screened BAC_end
(941 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig396 779 0.0
3x_Contig169 307 2e-83
>3x_Contig396
Length = 1324
Score = 779 bits (393), Expect = 0.0
Identities = 393/393 (100%)
Strand = Plus / Minus
Query: 47 acaagacggtaaaaaatatagagacatatagctatagtataaatatcgattaaaccccca 106
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 402 acaagacggtaaaaaatatagagacatatagctatagtataaatatcgattaaaccccca 343
Query: 107 acctgaacaatagaacggtatcttccaagagtacacaacccaacggtttttgcttatttt 166
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 342 acctgaacaatagaacggtatcttccaagagtacacaacccaacggtttttgcttatttt 283
Query: 167 gtcttgggacggtttttcttgacttttcggcattcagcttggttcttttttgtaaaccag 226
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 282 gtcttgggacggtttttcttgacttttcggcattcagcttggttcttttttgtaaaccag 223
Query: 227 tttcagaagaaatttaaaaggtcaaaacacagacaactattaattttaattacaaattat 286
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 222 tttcagaagaaatttaaaaggtcaaaacacagacaactattaattttaattacaaattat 163
Query: 287 tgtatttgcatttaaatgagagtatcaataaacaggtgataaggagaggttgcatagact 346
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 162 tgtatttgcatttaaatgagagtatcaataaacaggtgataaggagaggttgcatagact 103
Query: 347 tttgggcgggtatacttgtacaaacgcaaaaactcacactactcagttggtatattgtat 406
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 102 tttgggcgggtatacttgtacaaacgcaaaaactcacactactcagttggtatattgtat 43
Query: 407 tgtcctatcttttgtttggctttacgtttcatt 439
|||||||||||||||||||||||||||||||||
Sbjct: 42 tgtcctatcttttgtttggctttacgtttcatt 10
>3x_Contig169
Length = 1338
Score = 307 bits (155), Expect = 2e-83
Identities = 338/382 (88%), Gaps = 13/382 (3%)
Strand = Plus / Plus
Query: 527 aacaccaagcaacagttacttctaatcgtcagcccttataactgaactttctttggtctg 586
|||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||
Sbjct: 1 aacaccaagcaacagttacttctaatcgtcagccctaataactgaactttctt-ggtctg 59
Query: 587 gatatatcagttttggaaaaagggggaagtttcaatcagcacacagaacatcttttttac 646
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 60 gatatatcagttttggaaaaagggggaagtttcaatcagcacacagaacatc-tttttac 118
Query: 647 catagaaattactctttctaaagtatgagccggcagaatactgcagctttctttgttatt 706
|||||||| ||||||||||||||||||||| | ||||||||||||| |||||||||| |
Sbjct: 119 catagaaa-tactctttctaaagtatgagcggcaagaatactgcagc-ttctttgtta-t 175
Query: 707 tacgaccattacagggaacttactgattccgagaaggcttatttctaatttccattattg 766
||||| || ||||||||||| |||||| | ||||||| |||| ||| |||||| |||||
Sbjct: 176 tacga-caatacagggaactcactgatccgaagaaggc-tattcctagtttcca-tattg 232
Query: 767 cattaaaaaatgatttcaaacttattcttgggggaacttcggnggaaatgggcctaaatg 826
||||| || |||| ||||||| ||||||| | ||||| |||| | ||||| | ||||||
Sbjct: 233 cattagaagatga-ttcaaacatattctt-gtggaacatcggt-gtaatggtcttaaatg 289
Query: 827 aggaattcctttacccccggagggttttttcagggttcaaatgaaattcccgaacaattt 886
|||||| | | || || |||| |||| ||||| || |||||||||||||||| || ||||
Sbjct: 290 aggaatccatcta-ccacgga-ggttatttcaaggctcaaatgaaattcccggacgattt 347
Query: 887 cccattttctccctcaactttt 908
|||||||||||| ||||||||
Sbjct: 348 cccattttctcctccaactttt 369
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7654
Number of Sequences: 1807
Number of extensions: 7654
Number of successful extensions: 64
Number of sequences better than 1.0e-20: 2
length of query: 941
length of database: 10,358,551
effective HSP length: 16
effective length of query: 925
effective length of database: 10,329,639
effective search space: 9554916075
effective search space used: 9554916075
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)