BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC37ZG08FM1.SCF screened BAC_end
(913 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1749 1558 0.0
>3x_Contig1749
Length = 22923
Score = 1558 bits (786), Expect = 0.0
Identities = 819/827 (99%), Gaps = 3/827 (0%)
Strand = Plus / Minus
Query: 87 gatatcgattgtgataaatttgggtcacacttacaggaaacttggtgaggacgaaagagc 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20456 gatatcgattgtgataaatttgggtcacacttacaggaaacttggtgaggacgaaagagc 20397
Query: 147 catcaaatgctttaagaccgtattagagagtagtaaacctactgccactttatggtgttc 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20396 catcaaatgctttaagaccgtattagagagtagtaaacctactgccactttatggtgttc 20337
Query: 207 cttagggtttctatatttaagaatgaaaaaaattgaaaaggcaatcgatagttttcataa 266
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20336 cttagggtttctatatttaagaatgaaaaaaattgaaaaggcaatcgatagttttcataa 20277
Query: 267 agctctagcgctggaccaaggtaaccaggcatcaaataaactattgaagactgccttaga 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20276 agctctagcgctggaccaaggtaaccaggcatcaaataaactattgaagactgccttaga 20217
Query: 327 gatcaatgcacatatgataattgatgagaatcaccctatggtaatttcatcgaacattca 386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20216 gatcaatgcacatatgataattgatgagaatcaccctatggtaatttcatcgaacattca 20157
Query: 387 aaatattccgacgtcacatgtatcaaagaatgataagaaaagaacatcattgggaattac 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20156 aaatattccgacgtcacatgtatcaaagaatgataagaaaagaacatcattgggaattac 20097
Query: 447 tagttttgatcccgtcaccgaggcaaaacggttaaaacaaggtatttcagatcacgaggg 506
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20096 tagttttgatcccgtcaccgaggcaaaacggttaaaacaaggtatttcagatcacgaggg 20037
Query: 507 cgattcaatggacattgaacaataaaagtaacatttatattcttgcatatatagcttaat 566
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20036 cgattcaatggacattgaacaataaaagtaacatttatattcttgcatatatagcttaat 19977
Query: 567 aggaaaagctcgcagttggaaaataacttgctagctttttcaagctgtcactctatgcct 626
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19976 aggaaaagctcgcagttggaaaataacttgctagctttttcaagctgtcactctatgcct 19917
Query: 627 gcgtccccacaggatctttggactctatgttctttctatggctcttggattttctttttt 686
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19916 gcgtccccacaggatctttggactctatgttctttctatggctcttggattttctttttt 19857
Query: 687 tccctcccgtggatcttccttttctctctggctcctttgaaatctaa-gattttccagat 745
||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||
Sbjct: 19856 tccctcccgtggatcttccttttctctctggctcctttg-aatctaaggattttccagat 19798
Query: 746 tctatggcattctctggcgctgccaaatcactatcctggtgcgaagcctttggtttgntc 805
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 19797 tctatggcattctctggcgctgccaaatcactatcctggtgcgaagcctttggtttgttc 19738
Query: 806 ttcaatttgtccttcgatttanatttanattttgagtttgctttgggaatcacaactttt 865
||||||||||||||||||||| ||||| ||||||||||||||||||||| ||||||||||
Sbjct: 19737 ttcaatttgtccttcgatttagatttagattttgagtttgctttgggaaccacaactttt 19678
Query: 866 tctggatccacgtattaattcaaaaccctctttttcagttttgttac 912
||| |||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 19677 tct-gatccacgtagtaattcaaaaccctctttttcagttttgttac 19632
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7562
Number of Sequences: 1807
Number of extensions: 7562
Number of successful extensions: 53
Number of sequences better than 1.0e-20: 1
length of query: 913
length of database: 10,358,551
effective HSP length: 16
effective length of query: 897
effective length of database: 10,329,639
effective search space: 9265686183
effective search space used: 9265686183
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)