BLASTN 2.2.3 [May-13-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= FJ0AC37ZG09RM1.SCF screened BAC_end (968 letters) Database: Klactis 3X assemblage 11/02 1807 sequences; 10,358,551 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value 3x_Contig931 1090 0.0 >3x_Contig931 Length = 3901 Score = 1090 bits (550), Expect = 0.0 Identities = 598/612 (97%), Gaps = 2/612 (0%) Strand = Plus / Plus Query: 161 gcatccgaagtacataagttataacctacctctgcaaccgaagggcgctcgccaacaggt 220 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1 gcatccgaagtacataagttataacctacctctgcaaccgaagggcgctcgccaacaggt 60 Query: 221 gacgaacttctgcagtcctctctcaatggtttcaaggcccacggccacgcgatattctac 280 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 61 gacgaacttctgcagtcctctctcaatggtttcaaggcccacggccacgcgatattctac 120 Query: 281 cagcttcacgagatccgggtaatgtcctgattttttttccttctttttcctccagctttg 340 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 121 cagcttcacgagatccgggtaatgtcctgattttttttccttctttttcctccagctttg 180 Query: 341 ataaggaaaagaaatgtcgggtattattaaccataagattctcaatcaagcaaggctcat 400 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 181 ataaggaaaagaaatgtcgggtattattaaccataagattctcaatcaagcaaggctcat 240 Query: 401 cacacggagtctgaaagcgaaaacgtcaacgaagatgggttggttctgggctgacaagct 460 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 241 cacacggagtctgaaagcgaaaacgtcaacgaagatgggttggttctgggctgacaagct 300 Query: 461 aagcacagcgtcaactaatgctactccaatttctggagatatttctgcgtgccctgtgat 520 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 301 aagcacagcgtcaactaatgctactccaatttctggagatatttctgcgtgccctgtgat 360 Query: 521 gcacgataaacctaatggaagcgatgtttccgcatgccctgttcttcatgataagaagac 580 ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct: 361 gcacgataaacctaagggaagcgatgtttccgcatgccctgttcttcatgataagaagac 420 Query: 581 cacagataaacccaccggtacggaatggtggttgtccagtcttgtctgatcaaaggtatc 640 ||||||||||||||||||||||||| ||||||||||||||||||||||||||| | ||| Sbjct: 421 cacagataaacccaccggtacggaa-ggtggttgtccagtcttgtctgatcaaggtaatc 479 Query: 641 atggcttaaatcttttg-accacattcctatcgncttgactgatgtcaaacagtctggtc 699 |||||||||||| |||| || |||||||||||| |||||||||||||||||||||||||| Sbjct: 480 atggcttaaatcctttgaacaacattcctatcgccttgactgatgtcaaacagtctggtc 539 Query: 700 aaaaactcgatctaccaacgnatcgtaccggtagtttcataccaaagggttagactgccg 759 |||||||||||||||||||| | ||||||| ||||| ||||||||||||| ||||||||| Sbjct: 540 aaaaactcgatctaccaacggagcgtaccgttagttccataccaaagggtaagactgccg 599 Query: 760 atgatgaatttt 771 |||||||||||| Sbjct: 600 atgatgaatttt 611 Database: Klactis 3X assemblage 11/02 Posted date: Nov 27, 2002 12:23 PM Number of letters in database: 10,358,551 Number of sequences in database: 1807 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 6925 Number of Sequences: 1807 Number of extensions: 6925 Number of successful extensions: 54 Number of sequences better than 1.0e-20: 1 length of query: 968 length of database: 10,358,551 effective HSP length: 16 effective length of query: 952 effective length of database: 10,329,639 effective search space: 9833816328 effective search space used: 9833816328 T: 0 A: 40 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 51 (101.6 bits)