BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC37ZG10RM1.SCF screened BAC_end
(922 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1171 1580 0.0
>3x_Contig1171
Length = 5011
Score = 1580 bits (797), Expect = 0.0
Identities = 841/852 (98%), Gaps = 3/852 (0%)
Strand = Plus / Minus
Query: 49 acagcttcca-tatgatagtttttgtgaaggacattatttgattttcaacttcggtagcg 107
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3085 acagcttccaatatgatagtttttgtgaaggacattatttgattttcaacttcggtagcg 3026
Query: 108 gaaacgttctcagatttccacctgaaggtatcgcccaatctatccatgaaataccataat 167
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3025 gaaacgttctcagatttccacctgaaggtatcgcccaatctatccatgaaataccataat 2966
Query: 168 ccattggcatcagcctttaacaaatcaccagacctgtaccaagcgtcccctttgcggaaa 227
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2965 ccattggcatcagcctttaacaaatcaccagacctgtaccaagcgtcccctttgcggaaa 2906
Query: 228 acatctctaatgacctttgattcagtgtcttttttgttccccatataaccttgaaaagaa 287
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2905 acatctctaatgacctttgattcagtgtcttttttgttccccatataaccttgaaaagaa 2846
Query: 288 gtttcaggcttttttggaacaaaaatcctcattaacaactctcctggttgaccaacttcc 347
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2845 gtttcaggcttttttggaacaaaaatcctcattaacaactctcctggttgaccaacttcc 2786
Query: 348 ggtgtttcagcaaatcctctatcatttctataaataatggtttcatcatcggggttaact 407
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2785 ggtgtttcagcaaatcctctatcatttctataaataatggtttcatcatcggggttaact 2726
Query: 408 ttcaccaaacactgctgaattgacaagaccatactgacgaaaggaccataatttctacag 467
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2725 ttcaccaaacactgctgaattgacaagaccatactgacgaaaggaccataatttctacag 2666
Query: 468 gcaccgataccaaaatcaccacgttgtagagaagtggtcgcaaatggagattcagttgag 527
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2665 gcaccgataccaaaatcaccacgttgtagagaagtggtcgcaaatggagattcagttgag 2606
Query: 528 gcataaaattctccaattatcttaatattgaacctttctttaaactctttccaaatatcc 587
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2605 gcataaaattctccaattatcttaatattgaacctttctttaaactctttccaaatatcc 2546
Query: 588 gttttcaaaccattcccgtatgcaatctctacgcggtgctgtttctcgtaggaactcacc 647
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2545 gttttcaaaccattcccgtatgcaatctctacgcggtgctgtttctcgtaggaactcacc 2486
Query: 648 ggagaattcaataagtaacggcaaacctccccgacatactggatatgagtggactcggtc 707
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2485 ggagaattcaataagtaacggcaaacctccccgacatactggatatgagtggactcggtc 2426
Query: 708 atacaaacttgtttccagaatgtagatgtcgagaacttgtttgaaatgggcacacaacca 767
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 2425 atacaaacttgtttccagaatgtagatgtcgagaacttgtttgaaatggcaacacaacca 2366
Query: 768 ccatgggcatagattgcacagactnctaaacatgctgcagttgaatgatacaatggcatt 827
||||||||| |||||||||||||| |||| |||||||||||||||||||||||||||||
Sbjct: 2365 ccatgggcaaagattgcacagactcctaacaatgctgcagttgaatgatacaatggcatt 2306
Query: 828 gctgtaaagaccgtcttgccttgagtgacacgcattat-ctaccaaac-atgaacacccg 885
|||||||||||||||||||||||||||||||||||||| ||||||||| ||||||| |||
Sbjct: 2305 gctgtaaagaccgtcttgccttgagtgacacgcattatcctaccaaacaatgaacaaccg 2246
Query: 886 atggttgatttt 897
|| |||||||||
Sbjct: 2245 attgttgatttt 2234
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6438
Number of Sequences: 1807
Number of extensions: 6438
Number of successful extensions: 28
Number of sequences better than 1.0e-20: 1
length of query: 922
length of database: 10,358,551
effective HSP length: 16
effective length of query: 906
effective length of database: 10,329,639
effective search space: 9358652934
effective search space used: 9358652934
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)