BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC37ZG11RM1.SCF screened BAC_end
(927 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1748 1380 0.0
>3x_Contig1748
Length = 22566
Score = 1380 bits (696), Expect = 0.0
Identities = 842/880 (95%), Gaps = 8/880 (0%)
Strand = Plus / Plus
Query: 45 gcttcttcaaagtattaccacgagcgccctagtaatagtccccacaaaatttatatccgg 104
|||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||
Sbjct: 6983 gcttcttcaaagtattaccacgag-gccctagtaatag-ccccacaaaatttatatccgg 7040
Query: 105 ataatcctccgtagggatgtaatatttgtcttgaaaccttgtaggtcttctatagtcgtc 164
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7041 ataatcctccgtagggatgtaatatttgtcttgaaaccttgtaggtcttctatagtcgtc 7100
Query: 165 cggtgtaacgaagtttggtatctttttcagagcaatctcaactagacgatgtctttcttc 224
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 7101 cggtgtaacgaagtttggtatcattttcagagcaatctcaactagacgatgtctttcttc 7160
Query: 225 ttccaattttcttttataccgttgttccttattgttggttcttctaccacgagcatcgta 284
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 7161 ttccaattttcttttataccgttgttccttagtgttggttcttctaccacgagcatcgta 7220
Query: 285 cacaggcggtggggaaggggaccttgcccttccagaaggaggagtcaaatcattcgatct 344
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7221 cacaggcggtggggaaggggaccttgcccttccagaaggaggagtcaaatcattcgatct 7280
Query: 345 aagctttgcagtgatttctgcaattctgaacatcacctggtatgctgtctcatgttccgg 404
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7281 aagctttgcagtgatttctgcaattctgaacatcacctggtatgctgtctcatgttccgg 7340
Query: 405 cgcgagaaagccattaattactgcaggtaatcctatttgttcaaagacggcattttcacg 464
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7341 cgcgagaaagccattaattactgcaggtaatcctatttgttcaaagacggcattttcacg 7400
Query: 465 cgcttttgctccccataatgcatcatatggattatcagtacgacctctttccattattat 524
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 7401 cgcttttgctccccataatgcatcatattgattatcagtacgacctctttccattattat 7460
Query: 525 gatacttagatgttactgctagcttaaaggcctacttattatgttattttccgtgcggag 584
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
Sbjct: 7461 gatacttagatgttactgctagcttaaaggcctccttattatgttattttccgtgcggtg 7520
Query: 585 agttaatgttttacttattcaaattatagtggtggcaaatgtccaaatataagttacttt 644
||||||||||||| ||||||||||||| ||| | | ||||||||||||||||||||||||
Sbjct: 7521 agttaatgttttagttattcaaattattgtgtttgtaaatgtccaaatataagttacttt 7580
Query: 645 gcttcaatggaaatgatgaaattgtacagttgagaaccaaaattcaaaaaacaccgtaga 704
|||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||
Sbjct: 7581 gcttcaatggaaatgatgaaattgtagagttgagaaccaaaaatcaaaaaacaccgtaga 7640
Query: 705 caggtctacttagaggaggagttactctgtaagttcaagtagactaaacgccatccactc 764
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 7641 caggtctacttagaggaggagtttctctgtaagttcaagtagactaaacgccatccactc 7700
Query: 765 tataagatttatgatcgcaataacggctacaagaaga-gttatagttgtatgcttacacg 823
|| |||| ||| | ||||||||||| || || |||| ||||||||| |||||||||| |
Sbjct: 7701 tagaagaattagaagcgcaataacgg-taaaaaaagaggttatagttttatgcttacaag 7759
Query: 824 taaccgcatatacaaaagttgtagaaccctatatgtgcaaaatctaatatcctagttaac 883
|||||| ||||| |||| ||||| || ||||||| ||||||||| |||| ||||||||||
Sbjct: 7760 taaccgaatataaaaaaattgta-aaacctatatatgcaaaatcaaataacctagttaac 7818
Query: 884 cataagcag-agcagtggcgggattcgtactttcagtttg 922
|| |||||| ||||||||| |||||||||||| |||||||
Sbjct: 7819 ca-aagcagaagcagtggc-ggattcgtacttccagtttg 7856
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6195
Number of Sequences: 1807
Number of extensions: 6195
Number of successful extensions: 46
Number of sequences better than 1.0e-20: 1
length of query: 927
length of database: 10,358,551
effective HSP length: 16
effective length of query: 911
effective length of database: 10,329,639
effective search space: 9410301129
effective search space used: 9410301129
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)