BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC37ZG12FM1.SCF screened BAC_end
(940 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1278 1172 0.0
>3x_Contig1278
Length = 6932
Score = 1172 bits (591), Expect = 0.0
Identities = 716/753 (95%), Gaps = 4/753 (0%)
Strand = Plus / Minus
Query: 85 atcagaagtgcgaatacagagatcaagcatcctaaacgcctatagcgtctccatagacaa 144
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4788 atcagaagtgcgaatacagagatcaagcatcctaaacgcctatagcgtctccatagacaa 4729
Query: 145 tcatgtccgagcgtaaatcaacaaacaaatactacccaccagactatgatccggtgaagg 204
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4728 tcatgtccgagcgtaaatcaacaaacaaatactacccaccagactatgatccggtgaagg 4669
Query: 205 ctgagcgagaggctcttttgctctccaaacggcttaaaacgatgaacaaggataccatca 264
||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 4668 ctgagcgagaggccagaaagctctccaaacggcttaaaacgatgaacaaggataccatca 4609
Query: 265 ctattagattgatgactccatttagcatgcggtgtctgaaatgtaatgacttcataccga 324
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4608 ctattagattgatgactccatttagcatgcggtgtctgaaatgtaatgacttcataccga 4549
Query: 325 agagcaggaaatttaatgcaaagaaggaaaccttacctgagaagtacttagacaagatcc 384
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4548 agagcaggaaatttaatgcaaagaaggaaaccttacctgagaagtacttagacaagatcc 4489
Query: 385 gtttatatcgttttgagatacgatgtccaagttgtaacaatgttatttctttcaagacta 444
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4488 gtttatatcgttttgagatacgatgtccaagttgtaacaatgttatttctttcaagacta 4429
Query: 445 atccacagactggagattatacaatggatgtaggcggagttaagaattttatcagtaccg 504
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4428 atccacagactggagattatacaatggatgtaggcggagttaagaattttatcagtaccg 4369
Query: 505 ctgataaaaatgggtcggaacccaataaggagatcccggagaatgagactttagatcaga 564
|||||||||||||||||||||||||||||||||||||||| |||||||||||||| || |
Sbjct: 4368 ctgataaaaatgggtcggaacccaataaggagatcccggaaaatgagactttagaacaaa 4309
Query: 565 tgttggaaagattagagagagagcaagagttggaaaacgagataggacaagatgatggca 624
| |||| || |||||| | |||||||||||||| |||||||| |||| ||||||||||||
Sbjct: 4308 tattggcaaaattagaaaaagagcaagagttggtaaacgagaaaggaaaagatgatggca 4249
Query: 625 gagatagaatggagattatagaggataaactagccaaattacatcgagaacaggatgacg 684
||||||||||||||||||||||||| ||||||||||||||||| ||||||||||| ||||
Sbjct: 4248 gagatagaatggagattatagaggaaaaactagccaaattacaacgagaacaggaggacg 4189
Query: 685 atgtttgaattggaaaaaatcgccgnaagagtaccaaatagaatagaggaacttggag-a 743
||| ||||||||||||||||||||| ||||| || || ||||||||| |||| | || |
Sbjct: 4188 atg-ttgaattggaaaaaatcgccgaaagagaacaaataagaatagagaaactagaagaa 4130
Query: 744 ttccatcactcaagaaagcgc-aacaaggagatcaggacactttaaatgatatgattgca 802
| | ||||||||||||||||| |||||| |||||||||||||||| ||||||||||||||
Sbjct: 4129 tacaatcactcaagaaagcgcaaacaagaagatcaggacactttagatgatatgattgca 4070
Query: 803 gaacaagc-tttnatgatcatgttgttaaacca 834
|||||||| ||| ||||||||||||||||||||
Sbjct: 4069 gaacaagcttttcatgatcatgttgttaaacca 4037
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6281
Number of Sequences: 1807
Number of extensions: 6281
Number of successful extensions: 39
Number of sequences better than 1.0e-20: 1
length of query: 940
length of database: 10,358,551
effective HSP length: 16
effective length of query: 924
effective length of database: 10,329,639
effective search space: 9544586436
effective search space used: 9544586436
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)