BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC37ZH01FM1.SCF screened BAC_end
(929 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1193 1560 0.0
>3x_Contig1193
Length = 4968
Score = 1560 bits (787), Expect = 0.0
Identities = 832/843 (98%), Gaps = 3/843 (0%)
Strand = Plus / Plus
Query: 87 attgtattgaaatgaagtacatcagttaaatcaatggtaatacaaaaagtgatccacaca 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1898 attgtattgaaatgaagtacatcagttaaatcaatggtaatacaaaaagtgatccacaca 1957
Query: 147 aacattacccggacacgtgaacagtttactctaatacgtgtttacatatcacgtgattaa 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1958 aacattacccggacacgtgaacagtttactctaatacgtgtttacatatcacgtgattaa 2017
Query: 207 gatactcgcttctaaaacagcagaattttgcaacctgcagtcgaatgtcaggtttagtca 266
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2018 gatactcgcttctaaaacagcagaattttgcaacctgcagtcgaatgtcaggtttagtca 2077
Query: 267 caacaatactgtgtttaaccgataatcttacagcactgaggcacagagatctgagttcaa 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2078 caacaatactgtgtttaaccgataatcttacagcactgaggcacagagatctgagttcaa 2137
Query: 327 gcctttccttagtgggtcattttttgttttgcattatttggcattttctgaccttgaaag 386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2138 gcctttccttagtgggtcattttttgttttgcattatttggcattttctgaccttgaaag 2197
Query: 387 aaatgttttgatgaaaaaaatatctagcaatacacaggatttatcaacacaacaaaaaga 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2198 aaatgttttgatgaaaaaaatatctagcaatacacaggatttatcaacacaacaaaaaga 2257
Query: 447 gaaccagagtagcctgtaaaagtccaattgctcaggctaaggtgagtgctagggatttga 506
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2258 gaaccagagtagcctgtaaaagtccaattgctcaggctaaggtgagtgctagggatttga 2317
Query: 507 tctgtttgaaccacatagaagatttatacattcttttccaactgcttatagattggaatc 566
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2318 tctgtttgaaccacatagaagatttatacattcttttccaactgcttatagattggaatc 2377
Query: 567 aagagatttagcaccatggatttcgaacaaaacgaagatattaacggtgttcgtttctca 626
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2378 aagagatttagcaccatggatttcgaacaaaacgaagatattaacggtgttcgtttctca 2437
Query: 627 tggaacgtgtttccagcgtcaagaactgacgctaataagaatgtggttccagttggatgt 686
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2438 tggaacgtgtttccagcgtcaagaactgacgctaataagaatgtggttccagttggatgt 2497
Query: 687 ttatacactcctttgaaggaacgtgaagatcttgctgttgctggctataatcctgtggta 746
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2498 ttatacactcctttgaaggaacgtgaagatcttgctgttgctggctataatcctgtggta 2557
Query: 747 tgtggtaacatcaactgtaaatctgtgttaaatccttactgggagatcgatgttagatcc 806
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 2558 tgtggtaacatcaactgtaaatctgtgttaaatccttactgtgagatcgatgttagatcc 2617
Query: 807 aatacctggacttgtcctatttgtaagacaag-aacattc-tcctcaa-attatgccatt 863
|||||||||||||||||||||||||||||||| ||||||| ||||||| ||||||||| |
Sbjct: 2618 aatacctggacttgtcctatttgtaagacaagaaacattcttcctcaacattatgccaat 2677
Query: 864 atgacgcaagaaactttaccactgggattgactattactacagttgaatttattaacagt 923
|||||||| |||||||||||||||| |||||||| |||||||||||||| ||| | ||||
Sbjct: 2678 atgacgcaggaaactttaccactggaattgactaatactacagttgaatatatcaccagt 2737
Query: 924 gtt 926
|||
Sbjct: 2738 gtt 2740
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7352
Number of Sequences: 1807
Number of extensions: 7352
Number of successful extensions: 49
Number of sequences better than 1.0e-20: 1
length of query: 929
length of database: 10,358,551
effective HSP length: 16
effective length of query: 913
effective length of database: 10,329,639
effective search space: 9430960407
effective search space used: 9430960407
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)