BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC37ZH02RM1.SCF screened BAC_end
         (934 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig950                                                         1181   0.0  
3x_Contig22                                                           178   1e-44

>3x_Contig950 
          Length = 3159

 Score = 1181 bits (596), Expect = 0.0
 Identities = 674/692 (97%), Gaps = 6/692 (0%)
 Strand = Plus / Plus

                                                                        
Query: 47   atggtggttggcgtgaagacatttatccaaaagggtttggattgtttttagattattgat 106
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 982  atggtggttggcgtgaagacatttatccaaaagggtttggattgtttttagattattgat 1041

                                                                        
Query: 107  gatccatttggggtcttttgttctaaaaatgatatccaatacatctaaagcattcataca 166
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1042 gatccatttggggtcttttgttctaaaaatgatatccaatacatctaaagcattcataca 1101

                                                                        
Query: 167  gtaatacaacaagttggctgattcaagatcttgctggatcatataatttttcgaaatagg 226
            ||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||
Sbjct: 1102 gtaatacaacaagttggctgattcaagatcttgctggatca-agaatttttcgaaatagg 1160

                                                                        
Query: 227  acaatttgacaactgcctctggcaggtatccgatggatagtaactcagttaaaacagata 286
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1161 acaatttgacaactgcctctggcaggtatccgatggatagtaactcagttaaaacagata 1220

                                                                        
Query: 287  atgcctttgatcccaatggcgtttcacaggccctatggttactaacacaaatgaaacgaa 346
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1221 atgcctttgatcccaatggcgtttcacaggccctatggttactaacacaaatgaaacgaa 1280

                                                                        
Query: 347  tcaaaaacgccgcaaatgcttcccgttgtgaaagagaggtagaagaagaggtaactattc 406
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1281 tcaaaaacgccgcaaatgcttcccgttgtgaaagagaggtagaagaagaggtaactattc 1340

                                                                        
Query: 407  cttcagaaccgtccatattgacatcggggtcatccttgctttgagccgaaaaggtttgtt 466
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1341 cttcagaaccgtccatattgacatcggggtcatccttgctttgagccgaaaaggtttgtt 1400

                                                                        
Query: 467  tttcccagtacataactagatcacaaagatcaatggttagcgtctgattttcggtagatg 526
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 1401 tttcccagtacataactagatcacaaagatcaatggttagcgtctgattttcggtagaag 1460

                                                                        
Query: 527  ggttggttaaaagggttaatctaccaatgtatgatatgatgtttggaatgaacatatctt 586
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1461 ggttggttaaaagggttaatctaccaatgtatgatatgatgtttggaatgaacatatctt 1520

                                                                        
Query: 587  tgtaagggaaaaatatgtccttttgacttatttag-attgatagaggatggtatttggtg 645
            |||||||||||||||||||||||||||||||| || |||||||||||||||||||| || 
Sbjct: 1521 tgtaagggaaaaatatgtccttttgacttattaagaattgatagaggatggtattttgtt 1580

                                                                        
Query: 646  ggaaagtaccttctaatatttacccctcttacccaattaacccacgtagtttggctcttt 705
            ||||  ||| |||||||| |||||| ||||||||||||||||||||||| ||||||| ||
Sbjct: 1581 ggaagttactttctaata-ttacccttcttacccaattaacccacgtag-ttggctc-tt 1637

                                            
Query: 706  cggaaccccttggatctatctggcactactgg 737
            ||||| ||||| ||||||||||  ||||||||
Sbjct: 1638 cggaa-ccctttgatctatctgctactactgg 1668


>3x_Contig22 
          Length = 1059

 Score =  178 bits (90), Expect = 1e-44
 Identities = 167/190 (87%), Gaps = 2/190 (1%)
 Strand = Plus / Plus

                                                                       
Query: 454 gaaaaggtttgtttttcccagtacataactagatcacaaagatcaatggttagcgtctga 513
           ||||||||||||||||   |||| |||| ||||| | |||||| ||||||||| || |||
Sbjct: 419 gaaaaggtttgtttttaaaagtaaataaatagataaaaaagattaatggttagagtatga 478

                                                                       
Query: 514 ttttcggtagatgggttggttaaaagggttaatctaccaatgtatgatatgatgtttgga 573
           |||| |||||| ||||||||||||||||||||| ||  ||||||||||||||||||||||
Sbjct: 479 ttttaggtagaagggttggttaaaagggttaatataaaaatgtatgatatgatgtttgga 538

                                                                       
Query: 574 atgaacatatctttgtaagggaaaaatatgtccttttgacttatttag-attgatagagg 632
           ||||| |||| ||||||||||||||||||||  |||||| ||||| || |||||||||||
Sbjct: 539 atgaaaatatatttgtaagggaaaaatatgtaattttgaattattaagaattgatagagg 598

                     
Query: 633 -atggtattt 641
            |||||||||
Sbjct: 599 tatggtattt 608



 Score =  176 bits (89), Expect = 5e-44
 Identities = 297/361 (82%), Gaps = 4/361 (1%)
 Strand = Plus / Plus

                                                                       
Query: 45  gtatggtggttggcgtgaagacatttatccaaaagggtttggattgtttttagattattg 104
           |||| |||||||| ||||||| ||||||  |||||| |||||||||||||||||||||||
Sbjct: 12  gtatagtggttggagtgaaga-atttataaaaaagg-tttggattgtttttagattattg 69

                                                                       
Query: 105 atgatccatttggggtcttttgttctaaaaatgatatccaatacatctaaagcattcata 164
           |||||  ||||||||| ||||||| ||||||||||||  |||| || ||||| ||| |||
Sbjct: 70  atgataaatttggggtattttgttataaaaatgatataaaataaatataaagaattaata 129

                                                                       
Query: 165 cagtaatacaacaagttggctgattcaagatcttgctggatcatataatttttcgaaata 224
            ||||||| || ||||||| ||||| ||||| ||| ||||| | | ||||||| ||||||
Sbjct: 130 aagtaataaaaaaagttggatgattaaagatattgatggat-aaagaatttttagaaata 188

                                                                       
Query: 225 ggacaatttgacaactgcctctggcaggtatccgatggatagtaactcagttaaaacaga 284
           ||| ||||||| || ||  | ||| ||||||  |||||||||||| | |||||||| |||
Sbjct: 189 ggaaaatttgaaaaatgtttatgg-aggtataagatggatagtaaataagttaaaaaaga 247

                                                                       
Query: 285 taatgcctttgatcccaatggcgtttcacaggccctatggttactaacacaaatgaaacg 344
           |||||  ||||||   ||||| |||| | |||   |||||||| ||| | |||||||| |
Sbjct: 248 taatgaatttgataaaaatggagttttaaaggaaatatggttaataaaaaaaatgaaaag 307

                                                                       
Query: 345 aatcaaaaacgccgcaaatgcttcccgttgtgaaagagaggtagaagaagaggtaactat 404
           ||| ||||| |  | ||||| ||   |||||||||||||||||||||||||||||| |||
Sbjct: 308 aataaaaaaagaagaaaatgattaaagttgtgaaagagaggtagaagaagaggtaaatat 367

            
Query: 405 t 405
           |
Sbjct: 368 t 368


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6856
Number of Sequences: 1807
Number of extensions: 6856
Number of successful extensions: 58
Number of sequences better than 1.0e-20: 2
length of query: 934
length of database: 10,358,551
effective HSP length: 16
effective length of query: 918
effective length of database: 10,329,639
effective search space: 9482608602
effective search space used: 9482608602
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)