BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC37ZH03FM1.SCF screened BAC_end
(930 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1683 1570 0.0
>3x_Contig1683
Length = 16378
Score = 1570 bits (792), Expect = 0.0
Identities = 829/839 (98%), Gaps = 2/839 (0%)
Strand = Plus / Minus
Query: 88 ttgctgtagtgtcacgttcgcacggctttccagtgtcatactagaatttggcataatagt 147
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4568 ttgctgtagtgtcacgttcgcacggctttccagtgtcatactagaatttggcataatagt 4509
Query: 148 gattccatttcttaataaataccaaatattggtcactcaccggttcgcgattgtcaactg 207
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4508 gattccatttcttaataaataccaaatattggtcactcaccggttcgcgattgtcaactg 4449
Query: 208 gttttactaattggaatgacggtggtagttcgtctagatgaagtagattgttccagccaa 267
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4448 gttttactaattggaatgacggtggtagttcgtctagatgaagtagattgttccagccaa 4389
Query: 268 aatggtaccttagcaaaacgtttaaagagagagagcacaagactttataattcacaacga 327
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4388 aatggtaccttagcaaaacgtttaaagagagagagcacaagactttataattcacaacga 4329
Query: 328 tatacttttctttaaaggtgtcccaatcagtattccgtagctgatgttgccactcttctg 387
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4328 tatacttttctttaaaggtgtcccaatcagtattccgtagctgatgttgccactcttctg 4269
Query: 388 tccagcgtgatgctctggcgttctctgctacaattatatccatgatccatataaatagat 447
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4268 tccagcgtgatgctctggcgttctctgctacaattatatccatgatccatataaatagat 4209
Query: 448 cgtgatctactcgagccagacagttccagaatgtcatatagttcaagtaccttgagtcga 507
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4208 cgtgatctactcgagccagacagttccagaatgtcatatagttcaagtaccttgagtcga 4149
Query: 508 attcttccgcaaaggctgaatcctttctcatgtatctcccgactacaccatccctgttca 567
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4148 attcttccgcaaaggctgaatcctttctcatgtatctcccgactacaccatccctgttca 4089
Query: 568 ttatacgattatcgtatttatcccttgtaattgagttgaaacaagtcagttgtagcaggt 627
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4088 ttatacgattatcgtatttatcccttgtaattgagttgaaacaagtcagttgtagcaggt 4029
Query: 628 ttgctagcttccagattagctctaggtcgtatccctctaaaaggaaatggagcatcaaat 687
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4028 ttgctagcttccagattagctctaggtcgtatccctctaaaaggaaatggagcatcaaat 3969
Query: 688 agttatctccagtctgtaatccgaatctagagattgacttccactgcaataacttgatca 747
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3968 agttatctccagtctgtaatccgaatctagagattgacttccactgcaataacttgatca 3909
Query: 748 gttttgatcttatctgtgattcaactgggaaatgcatatcgtccactaatttattaatct 807
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 3908 gttttgatcttatctgtgattcaactggaaaatgcatatcgtccactaatttattaatct 3849
Query: 808 cagccattggggtacttgggaatggagtcattttagaccttatgatgttgtcctaactac 867
|||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 3848 cagccatttgggtacttgggaatggagtcattttagaccttatgatgttgtctaaactac 3789
Query: 868 tcgtatcgnccatttacttggtagaaaatatgttaaaatcccgtgttc-acacagtgtt 925
|||||||| |||| ||||||||||||| |||||||||| |||||||| ||||||||||
Sbjct: 3788 tcgtatcgtccatatacttggtagaaataatgttaaaat-ccgtgttcaacacagtgtt 3731
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5017
Number of Sequences: 1807
Number of extensions: 5017
Number of successful extensions: 27
Number of sequences better than 1.0e-20: 1
length of query: 930
length of database: 10,358,551
effective HSP length: 16
effective length of query: 914
effective length of database: 10,329,639
effective search space: 9441290046
effective search space used: 9441290046
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)