BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC37ZH03RM1.SCF screened BAC_end
(936 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1210 1417 0.0
>3x_Contig1210
Length = 6392
Score = 1417 bits (715), Expect = 0.0
Identities = 831/858 (96%), Gaps = 9/858 (1%)
Strand = Plus / Minus
Query: 48 aggtgaataaattgtgagacaaagaaaaaaaagtaagaagagaaaaagttgtaaaaccct 107
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5461 aggtgaataaattgtgagacaaagaaaaaaaagtaagaagagaaaaagttgtaaaaccct 5402
Query: 108 tcagtaatactaaaagagtcatcaaagaaaccgtgtcctaccacgtcaatagtttcggtt 167
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5401 tcagtaatactaaaagagtcatcaaagaaaccgtgtcctaccacgtcaatagtttcggtt 5342
Query: 168 aacatctttaattaaaatgggaggttggtcataacaaatatcattatatcttggtagatt 227
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5341 aacatctttaattaaaatgggaggttggtcataacaaatatcattatatcttggtagatt 5282
Query: 228 ttcgatggaactttatcattcttctcgaacggaaggaactaaagagagtagtgtctgggc 287
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5281 ttcgatggaactttatcattcttctcgaacggaaggaactaaagagagtagtgtctgggc 5222
Query: 288 atgtttcaatgatatcgtatctctcagctaattacacttattgctttggttcaccacctt 347
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5221 atgtttcaatgatatcgtatctctcagctaattacacttattgctttggttcaccacctt 5162
Query: 348 gttggttagaagcgtcgttcttgtacatttgttcgaacaacttcatggaagcggtttgta 407
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5161 gttggttagaagcgtcgttcttgtacatttgttcgaacaacttcatggaagcggtttgta 5102
Query: 408 attcttcagtcttggtcttcaactcttcagcgtcgacttcttcaccggcttgaactctag 467
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5101 attcttcagtcttggtcttcaactcttcagcgtcgacttcttcaccggcttgaactctag 5042
Query: 468 cgaccaattctctcaaagcagcgacttggtccttaaccttttgagcttcagccttgtcca 527
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5041 cgaccaattctctcaaagcagcgacttggtccttaaccttttgagcttcagccttgtcca 4982
Query: 528 atttttcttcgaattccttcaaagaagcttcggtatcgttggccaattggtcacccttgt 587
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4981 atttttcttcgaattccttcaaagaagcttcggtatcgttggccaattggtcacccttgt 4922
Query: 588 tggcggtttcaatagccttctttctggtttcatcttgttctctgaa-ttttcagcatcgc 646
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 4921 tggcggtttcaatagccttctttctggtttcatcttgttctctgaacttttcagcatcgc 4862
Query: 647 ttaccatttgctcgatttcagatttcgacaaaccggaatgatccagc-acagtgatggaa 705
| |||||||||||||||||||||| |||||||||||| || ||||| ||||||||||||
Sbjct: 4861 taaccatttgctcgatttcagattcggacaaaccggaa-gaaccagcaacagtgatggaa 4803
Query: 706 gcattcttgtttggaagccttgtctctagcagagacgttgatgataccatcggcatcaat 765
|||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4802 gcatccttg-ttggaagccttgtctctagcagagacgttgatgataccatcggcatcaat 4744
Query: 766 ttcgaaagaatc-tcgatttgtgggac-ccccttggagctggtgggatacangac-aagt 822
||||||||| | |||||||||||||| ||| |||||||||||||||||| ||| ||||
Sbjct: 4743 atcgaaagaaacttcgatttgtgggacaccctttggagctggtgggataccagacaaagt 4684
Query: 823 gaagtta-cgatcaacttgttgtcttttgaccatttctttttccccttggaaaactttga 881
||||||| |||||||||||||||| | |||||| |||| |||| |||||||||||| |||
Sbjct: 4683 gaagttaccgatcaacttgttgtc-tctgaccaattctctttcaccttggaaaactctga 4625
Query: 882 ttcccacgagggtttgac 899
|| ||||| ||||||||
Sbjct: 4624 tttccacggaggtttgac 4607
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8624
Number of Sequences: 1807
Number of extensions: 8624
Number of successful extensions: 62
Number of sequences better than 1.0e-20: 1
length of query: 936
length of database: 10,358,551
effective HSP length: 16
effective length of query: 920
effective length of database: 10,329,639
effective search space: 9503267880
effective search space used: 9503267880
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)