BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC37ZH04RM1.SCF screened BAC_end
(930 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig526 948 0.0
3x_Contig1599 244 3e-64
>3x_Contig526
Length = 2622
Score = 948 bits (478), Expect = 0.0
Identities = 485/486 (99%), Gaps = 1/486 (0%)
Strand = Plus / Minus
Query: 47 aaagatctgggcacctttgtaagatgcaagagtagagatacccatctttgacataacttt 106
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 485 aaagatctgggcacctttgtaagatgcaagagtagagatacccatctttgacataacttt 426
Query: 107 gaagataccaccatcaaccgcgtgtttgtaattatctaataaagtcttatcgtcaattga 166
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 425 gaagataccaccatcaaccgcgtgtttgtaattatctaataaagtcttatcgtcaattga 366
Query: 167 tgaatcatcgttgttgacatttcggactaatccttcatgattcattctgaccaaggtctc 226
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 365 tgaatcatcgttgttgacatttcggactaatccttcatgattcattctgaccaaggtctc 306
Query: 227 catggctaggtaagggaaaataccatcacaaccataacctaatagaacacagaaatgatg 286
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 305 catggctaggtaagggaaaataccatcacaaccataacctaatagaacacagaaatgatg 246
Query: 287 cacctcgcgagcttcaccagtttccaagatcaaagccacctgagaacgctgtttgttgcg 346
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 245 cacctcgcgagcttcaccagtttccaagatcaaagccacctgagaacgctgtttgttgcg 186
Query: 347 aacaagatggtgatgaatggcaccaatagcgatcaacgaagagattgagacccgatccgc 406
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 185 aacaagatggtgatgaatggcaccaatagcgatcaacgaagagattgagacccgatccgc 126
Query: 407 agataacagtctgtcgctaatgaacaaaatcttctttccttgatcaatagcatcactggc 466
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 125 agataacagtctgtcgctaatgaacaaaatcttctttccttgatcaatagcatcactggc 66
Query: 467 ttcctgtgtgattctgtcaatggtagccgtgtagcctaatagaccttcttctttagggaa 526
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 65 ttcctgtgt-attctgtcaatggtagccgtgtagcctaatagaccttcttctttagggaa 7
Query: 527 agtaat 532
||||||
Sbjct: 6 agtaat 1
>3x_Contig1599
Length = 10178
Score = 244 bits (123), Expect = 3e-64
Identities = 192/210 (91%), Gaps = 5/210 (2%)
Strand = Plus / Plus
Query: 573 atatttttcaaggcttcaaattcgtccccattgtaaattggcgattttaaaactaaacga 632
|||||||||||||||||||||||||||| || ||||||||||||||||||||||||||
Sbjct: 1 atatttttcaaggcttcaaattcgtcccaatgtaaaattggcgattttaaaactaaacga 60
Query: 633 tcgcattgagaaagatgcatttccaaaagttccctttgagtccctacgaaacattccaag 692
|||||||||||| ||||||||||||||||||||| ||||| ||||||||||||||||||
Sbjct: 61 tcgcattgagaaggatgcatttccaaaagttccc-ttgaggtcctacgaaacattccaag 119
Query: 693 gacttgactttggcctcacgaattggatcaattggaagggttttgtcaccctgggccaaa 752
||| |||| ||||||||||||||||||||||||||| || ||||||| ||||||| |||
Sbjct: 120 gacatgacgttggcctcacgaattggatcaattgga--gggtttgtca-cctgggcgaaa 176
Query: 753 agcttctctgaaataatcatttaattgtac 782
||| |||||||||||||||| |||| ||||
Sbjct: 177 agc-tctctgaaataatcatataatagtac 205
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6400
Number of Sequences: 1807
Number of extensions: 6400
Number of successful extensions: 51
Number of sequences better than 1.0e-20: 2
length of query: 930
length of database: 10,358,551
effective HSP length: 16
effective length of query: 914
effective length of database: 10,329,639
effective search space: 9441290046
effective search space used: 9441290046
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)