BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC37ZH05FM1.SCF screened BAC_end
(912 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1193 1576 0.0
>3x_Contig1193
Length = 4968
Score = 1576 bits (795), Expect = 0.0
Identities = 817/825 (99%)
Strand = Plus / Minus
Query: 87 gaggttttcctcttctgcagtagtatccacaataaagaagaaaattggtggaacttggac 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2803 gaggttttcctcttctgcagtagtatccacaataaagaagaaaattggtggaacttggac 2744
Query: 147 aggaacactggtgatatattcaactgtagtattagtcaattccagtggtaaagtttcctg 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2743 aggaacactggtgatatattcaactgtagtattagtcaattccagtggtaaagtttcctg 2684
Query: 207 cgtcatattggcataatgttgaggaagaatgtttcttgtcttacaaataggacaagtcca 266
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2683 cgtcatattggcataatgttgaggaagaatgtttcttgtcttacaaataggacaagtcca 2624
Query: 267 ggtattggatctaacatcgatctcacagtaaggatttaacacagatttacagttgatgtt 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2623 ggtattggatctaacatcgatctcacagtaaggatttaacacagatttacagttgatgtt 2564
Query: 327 accacataccacaggattatagccagcaacagcaagatcttcacgttccttcaaaggagt 386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2563 accacataccacaggattatagccagcaacagcaagatcttcacgttccttcaaaggagt 2504
Query: 387 gtataaacatccaactggaaccacattcttattagcgtcagttcttgacgctggaaacac 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2503 gtataaacatccaactggaaccacattcttattagcgtcagttcttgacgctggaaacac 2444
Query: 447 gttccatgagaaacgaacaccgttaatatcttcgttttgttcgaaatccatggtgctaaa 506
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2443 gttccatgagaaacgaacaccgttaatatcttcgttttgttcgaaatccatggtgctaaa 2384
Query: 507 tctcttgattccaatctataagcagttggaaaagaatgtataaatcttctatgtggttca 566
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2383 tctcttgattccaatctataagcagttggaaaagaatgtataaatcttctatgtggttca 2324
Query: 567 aacagatcaaatccctatcactcaccttatcctgagcaattggacttttacaggctactc 626
||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 2323 aacagatcaaatccctagcactcaccttagcctgagcaattggacttttacaggctactc 2264
Query: 627 tggttctctttttgttgtgttgataaatcctgtgtattgctagatatttttttcatcaaa 686
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2263 tggttctctttttgttgtgttgataaatcctgtgtattgctagatatttttttcatcaaa 2204
Query: 687 acatttctttcaaggtcagaaaatgccaaataatgcataacatataatgacccactaagg 746
||||||||||||||||||||||||||||||||||||| |||| | |||||||||||||||
Sbjct: 2203 acatttctttcaaggtcagaaaatgccaaataatgcaaaacaaaaaatgacccactaagg 2144
Query: 747 aaaggcttgaactcagatctctgtgcctcagtgctgtaagattatcggttaaacacagta 806
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2143 aaaggcttgaactcagatctctgtgcctcagtgctgtaagattatcggttaaacacagta 2084
Query: 807 ttgttgtgactaaacctgacattcgactgcnagttgcaaaattctgctgttttagaagcg 866
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 2083 ttgttgtgactaaacctgacattcgactgcaggttgcaaaattctgctgttttagaagcg 2024
Query: 867 agtatcttaatcacgtgatatgtaaacacgtattanagtaaactg 911
||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 2023 agtatcttaatcacgtgatatgtaaacacgtattagagtaaactg 1979
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7079
Number of Sequences: 1807
Number of extensions: 7079
Number of successful extensions: 50
Number of sequences better than 1.0e-20: 1
length of query: 912
length of database: 10,358,551
effective HSP length: 16
effective length of query: 896
effective length of database: 10,329,639
effective search space: 9255356544
effective search space used: 9255356544
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)