BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC37ZH05RM1.SCF screened BAC_end
(923 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1788 1564 0.0
>3x_Contig1788
Length = 28493
Score = 1564 bits (789), Expect = 0.0
Identities = 858/876 (97%), Gaps = 4/876 (0%)
Strand = Plus / Minus
Query: 47 ttgtccattcaccttgacgaatttcactgtactgtcgttaggaaacactgtcgtcaggaa 106
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3294 ttgtccattcaccttgacgaatttcactgtactgtcgttaggaaacactgtcgtcaggaa 3235
Query: 107 atccagcttcggttccaactccgcacagtatctacacccaggtttgaacacatacaacag 166
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3234 atccagcttcggttccaactccgcacagtatctacacccaggtttgaacacatacaacag 3175
Query: 167 tatattcgtcgctgattctttatttctataataattagcatgtaccagatcatagaactg 226
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3174 tatattcgtcgctgattctttatttctataataattagcatgtaccagatcatagaactg 3115
Query: 227 ctcgctgctatccagatgcacaatcctcgaagagcatcgtcccactattaccaactgcaa 286
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3114 ctcgctgctatccagatgcacaatcctcgaagagcatcgtcccactattaccaactgcaa 3055
Query: 287 tagccatacaaccactagtagtacagaacttatcttcagcatccgaagagtgggtggcct 346
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3054 tagccatacaaccactagtagtacagaacttatcttcagcatccgaagagtgggtggcct 2995
Query: 347 ctttaattttgcaactactaaggtgatagaggtgcttccaagagatcaaacatgttatct 406
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2994 ctttaattttgcaactactaaggtgatagaggtgcttccaagagatcaaacatgttatct 2935
Query: 407 cttaacttatttgaagaatactgtatgtacctaagtcatattctttccaaaacctgttct 466
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2934 cttaacttatttgaagaatactgtatgtacctaagtcatattctttccaaaacctgttct 2875
Query: 467 tggcgaaaattaggtgaggacatggaatcacagaaaataagaccaaaaattcaaaaaaaa 526
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2874 tggcgaaaattaggtgaggacatggaatcacagaaaataagaccaaaaattcaaaaaaaa 2815
Query: 527 aagattaaggaacattgaaccctttcatgaatacaaaaacgcaagtgaaactaaaagagg 586
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2814 aagattaaggaacattgaaccctttcatgaatacaaaaacgcaagtgaaactaaaagagg 2755
Query: 587 tattacgatgtgttagcttatcgaaggttaaaaccaagaagaacacgcgatggggttttt 646
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2754 tattacgatgtgttagcttatcgaaggttaaaaccaagaagaacacgcgatggggttttt 2695
Query: 647 ccatgataatccagtcatcgatttttttcatcgcataacgcgtaaacccagctccatcat 706
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2694 ccatgataatccagtcatcgatttttttcatcgcataacgcgtaaacccagctccatcat 2635
Query: 707 catgtggatctttactggccttatcgtttccagtacaatcgtctncatatggtcgttacc 766
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 2634 catgtggatctttactggccttatcgtttccagtacaatcgtctccatatggtcgttacc 2575
Query: 767 cgcctttccagatggaaaaaaggggaaaccacgtgacttatacagaagaagcaagtgaca 826
|||| ||||||||||||||| ||| ||||||||||||||| |||||||||||||||||||
Sbjct: 2574 cgccattccagatggaaaaaggggaaaaccacgtgacttaaacagaagaagcaagtgaca 2515
Query: 827 ttaccctacctttctacattatttctccaaacgatttcaataaagctaagccatatacag 886
|||||||||||| |||| || ||||||||||||| |||| ||||||||| |||||||
Sbjct: 2514 ttaccctaccttctaacataatatctccaaacgattccaat-aagctaagcaatataca- 2457
Query: 887 gggttgttagttaaatccgaagtcttcttccatcag 922
|||||||||| || | |||||||| |||||||||||
Sbjct: 2456 gggttgttag-tagagccgaagtc-tcttccatcag 2423
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7774
Number of Sequences: 1807
Number of extensions: 7774
Number of successful extensions: 56
Number of sequences better than 1.0e-20: 1
length of query: 923
length of database: 10,358,551
effective HSP length: 16
effective length of query: 907
effective length of database: 10,329,639
effective search space: 9368982573
effective search space used: 9368982573
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)