BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC37ZH07FM1.SCF screened BAC_end
(920 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig627 1455 0.0
>3x_Contig627
Length = 1782
Score = 1455 bits (734), Expect = 0.0
Identities = 799/814 (98%), Gaps = 5/814 (0%)
Strand = Plus / Plus
Query: 87 atctaaattgtggtcgtgtagaagcctcaatcaaggtatttaaaaaagttcttgagctag 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 133 atctaaattgtggtcgtgtagaagcctcaatcaaggtatttaaaaaagttcttgagctag 192
Query: 147 acgaaaatcaccatttcgcctggtatttcctcgcaatcgctctttcagcattaggagaat 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 193 acgaaaatcaccatttcgcctggtatttcctcgcaatcgctctttcagcattaggagaat 252
Query: 207 ttgatagaagtattgaaattttcgagaggttagtaaatactgatgattctgaagaatgtt 266
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 253 ttgatagaagtattgaaattttcgagaggttagtaaatactgatgattctgaagaatgtt 312
Query: 267 ttatggtctctgagatatctacactcatagattatgccacagaactatattcccgaggat 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 313 ttatggtctctgagatatctacactcatagattatgccacagaactatattcccgaggat 372
Query: 327 atttgttgaaagcaattgatgtatcttctaaagccatttcgaaaattgaacatgtgatat 386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 373 atttgttgaaagcaattgatgtatcttctaaagccatttcgaaaattgaacatgtgatat 432
Query: 387 gcttaatatctgcgaacttacagaatgtatggatttctcttagtaaagcgttaagaatat 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 433 gcttaatatctgcgaacttacagaatgtatggatttctcttagtaaagcgttaagaatat 492
Query: 447 ttgttatcattgaatctcagctcgataatttgcctattgattctctcgtaaagatcttca 506
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 493 ttgttatcattgaatctcagctcgataatttgcctattgattctctcgtaaagatcttca 552
Query: 507 gcactgtacctatgtcaactgaagttactgagcttactcttgatggaatttcgttggata 566
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 553 gcactgtacctatgtcaactgaagttactgagcttactcttgatggaatttcgttggata 612
Query: 567 caattttggctgatgaatcttctgataatatgactattgcccttaagttcgtcgttctat 626
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 613 caattttggctgatgaatcttctgataatatgactattgcccttaagttcgtcgttctat 672
Query: 627 ctgctaagtacccccttcttatggacaatttcaattccatgtctaagacagttcatgccg 686
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 673 ctgctaagtacccccttcttatggacaatttcaattccatgtctaagacagttcatgccg 732
Query: 687 gtttatggtacaatctcggctgcgctgaactgttgggactattaaccttttcggaagata 746
||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||
Sbjct: 733 gtttatggtacaatctcggctgcgctgaactgttgggactattaaccgtttcggaggata 792
Query: 747 gtttttcgtgatgctgctattcatgcatttaaaagctcgattcgctgccagtcgaataac 806
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 793 g-ttttcgtgatgctgctattcatgcatttaaaagctcgattcgctgccagtcgaataac 851
Query: 807 acag-atcatggatagggtttagtattccaacaatgaatgttaactaccaggtttcccaa 865
|||| |||||||||||| || |||| ||||||||||||| | ||||||||||||||||
Sbjct: 852 acagaatcatggataggtttaggtatcgcaacaatgaatgtcagctaccaggtttcccaa 911
Query: 866 c-ttgtttcattaaaagc-attgcgcttaattcc 897
| |||||||| ||||||| |||||||| ||||||
Sbjct: 912 cattgtttca-taaaagcaattgcgctaaattcc 944
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5960
Number of Sequences: 1807
Number of extensions: 5960
Number of successful extensions: 47
Number of sequences better than 1.0e-20: 1
length of query: 920
length of database: 10,358,551
effective HSP length: 16
effective length of query: 904
effective length of database: 10,329,639
effective search space: 9337993656
effective search space used: 9337993656
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)