BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC37ZH08RM1.SCF screened BAC_end
(914 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1785 1187 0.0
>3x_Contig1785
Length = 37935
Score = 1187 bits (599), Expect = 0.0
Identities = 701/727 (96%), Gaps = 6/727 (0%)
Strand = Plus / Minus
Query: 36 aagcttataggaagctgaattctgactttgtgaattcgggatttgatatggttattattc 95
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2928 aagcttataggaagctgaattctgactttgtgaattcgggatttgatatggttattattc 2869
Query: 96 aaatgcatatgcaatggagtgtttagtttatacttcatgcaggagagaaaaaaaagagtg 155
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2868 aaatgcatatgcaatggagtgtttagtttatacttcatgcaggagagaaaaaaaagagtg 2809
Query: 156 tgagatgaaatcgataaaggatagaatgcaaatatggtgaatgatgcagattcacttatt 215
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2808 tgagatgaaatcgataaaggatagaatgcaaatatggtgaatgatgcagattcacttatt 2749
Query: 216 tggaattacccattacggtgtcgtcacttttgtttttagtgggttcggtaatggtacctg 275
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2748 tggaattacccattacggtgtcgtcacttttgtttttagtgggttcggtaatggtacctg 2689
Query: 276 atgttagctctggtaggttagattcgattgattttctggaattcaaggaccctaattccc 335
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2688 atgttagctctggtaggttagattcgattgattttctggaattcaaggaccctaattccc 2629
Query: 336 atacagtcgccgagtctccactgatgttgtcttgtaaatttgaccaaatatcaccatcat 395
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2628 atacagtcgccgagtctccactgatgttgtcttgtaaatttgaccaaatatcaccatcat 2569
Query: 396 gcgtagatgtacatgggggttcatcggtttctactagttggtagtcctgttgtacttctt 455
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2568 gcgtagatgtacatgggggttcatcggtttctactagttggtagtcctgttgtacttctt 2509
Query: 456 gtagtctttttctttgcatgtatctgtagtagttgtaatagcatacgtcgattagtacaa 515
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2508 gtagtctttttctttgcatgtatctgtagtagttgtaatagcatacgtcgattagtacaa 2449
Query: 516 cattcatgcctaaccagttgtaaaatcctagcctttcattgaataccagcatgcctaag- 574
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2448 caatcatgcctaaccagttgtaaaatcctagcctttcattgaataccagcatgcctaaga 2389
Query: 575 aaacggtgaatagttctttgatgatcccggtgacacttttaggttatacaggatgccatt 634
|||||||||||||||||||||||||||||||||||||| || | |||||||| | |||
Sbjct: 2388 aaacggtgaatagttctttgatgatcccggtgacacttaaagttaatacaggagccaatt 2329
Query: 635 gt-atataccaaact-acacattgttaatttgaaaacaa-gcagctaggggagtgggaga 691
|| |||||||||||| ||||||||||||| ||||||||| ||||||| ||||||| ||||
Sbjct: 2328 gtaatataccaaactcacacattgttaatatgaaaacaaggcagcta-gggagtgtgaga 2270
Query: 692 a-cgcttattcacgtattataaccgcaagtttcgaatgacctttcccagtcctcatttca 750
| |||| || |||||| || | |||| |||||||||||||||| || |||| ||| ||||
Sbjct: 2269 agcgctaatccacgtaatagagccgcgagtttcgaatgaccttcccaagtcatcaattca 2210
Query: 751 gaatgca 757
|||||||
Sbjct: 2209 gaatgca 2203
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7880
Number of Sequences: 1807
Number of extensions: 7880
Number of successful extensions: 43
Number of sequences better than 1.0e-20: 1
length of query: 914
length of database: 10,358,551
effective HSP length: 16
effective length of query: 898
effective length of database: 10,329,639
effective search space: 9276015822
effective search space used: 9276015822
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)