BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC37ZH09FM1.SCF screened BAC_end
(936 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1726 1396 0.0
>3x_Contig1726
Length = 20144
Score = 1396 bits (704), Expect = 0.0
Identities = 820/846 (96%), Gaps = 11/846 (1%)
Strand = Plus / Minus
Query: 85 ccatggaacgcttcggccgacagctttgcgacatccgagattgaaagtatgttcaaactg 144
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18534 ccatggaacgcttcggccgacagctttgcgacatccgagattgaaagtatgttcaaactg 18475
Query: 145 taagtcgaggtttttagtagagctgttggttgctgtatgctcaatatcaacaagggttgt 204
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18474 taagtcgaggtttttagtagagctgttggttgctgtatgctcaatatcaacaagggttgt 18415
Query: 205 tgaatggtcatattctggatcattttccaaaattcttcttctcttgcttgttggttcttg 264
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18414 tgaatggtcatattctggatcattttccaaaattcttcttctcttgcttgttggttcttg 18355
Query: 265 aaaaaactcagaagattgcgtctgcctctgatagtatgtttctagtatgcccgaactttt 324
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18354 aaaaaactcagaagattgcgtctgcctctgatagtatgtttctagtatgcccgaactttt 18295
Query: 325 aatttgatcgtcaactatctctgtagtgttcctggcacggatccgagaaagaataaatgg 384
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18294 aatttgatcgtcaactatctctgtagtgttcctggcacggatccgagaaagaataaatgg 18235
Query: 385 atttgaaagagtcgtatttctggatagctctacgtcttcaagatctcgctcaatgcagca 444
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18234 atttgaaagagtcgtatttctggatagctctacgtcttcaagatctcgctcaatgcagca 18175
Query: 445 atcctcggtgttcacaatgtcagaatatagaaggttttcccttactggtgaagatctacc 504
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18174 atcctcggtgttcacaatgtcagaatatagaaggttttcccttactggtgaagatctacc 18115
Query: 505 atcggatagcgtgccgctatacatgtctgtcaaccattcagattccttctcgagaatttg 564
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18114 atcggatagcgtgccgctatacatgtctgtcaaccattcagattccttctcgagaatttg 18055
Query: 565 ttgagtagggttattggttatttgccggtgaatttgctttggaatgtcacttgtattaat 624
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18054 ttgagtagggttattggttatttgccggtgaatttgctttggaatgtcacttgtattaat 17995
Query: 625 tattctacgagtgataatcactgattcactatcaatatgggtagaatttgaaggatcatt 684
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17994 tattctacgagtgaaaatcactgattcactatcaatatgggtagaatttgaaggatcatt 17935
Query: 685 atactgcatgtgtggagcgtaaaatgtgagcagtgaacattgc-aaatagatagagcttt 743
||||||||||||||||||||| || |||||||||||||||||| ||||||||||||||||
Sbjct: 17934 atactgcatgtgtggagcgtagaaggtgagcagtgaacattgcaaaatagatagagcttt 17875
Query: 744 ttccagtgtaagtgcgacagctttattttcggcattgactacagcattgtcgcttgtatt 803
||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||
Sbjct: 17874 ttccagtgtaagtgcgacagctttattttcgccattgactacagcattgtcgctagtatg 17815
Query: 804 ggtgcat-aaaattgaatgaa-catgcccctcggtt-ttgtttccc-aaaagcttat-ta 858
| |||| ||||||||||||| |||| ||||||||| | ||||||| ||| |||||| |
Sbjct: 17814 gtggcataaaaattgaatgaaccatg-ccctcggttctggtttcccgaaatgcttataaa 17756
Query: 859 attccttg-aaaaatgattgacttttttacaaaa--ccgattgtcccattactg-ttntc 914
|||||||| ||||||||||||||||||||| ||| | |||||| ||||||||| || ||
Sbjct: 17755 attccttgaaaaaatgattgacttttttaccaaagcctgattgtaccattactgcttctc 17696
Query: 915 cattaa 920
||||||
Sbjct: 17695 cattaa 17690
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6397
Number of Sequences: 1807
Number of extensions: 6397
Number of successful extensions: 38
Number of sequences better than 1.0e-20: 1
length of query: 936
length of database: 10,358,551
effective HSP length: 16
effective length of query: 920
effective length of database: 10,329,639
effective search space: 9503267880
effective search space used: 9503267880
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)