BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC37ZH10FM1.SCF screened BAC_end
(935 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1785 1532 0.0
>3x_Contig1785
Length = 37935
Score = 1532 bits (773), Expect = 0.0
Identities = 833/845 (98%), Gaps = 6/845 (0%)
Strand = Plus / Plus
Query: 86 ctggctgaggtggagtggtttggccttgagacttgaaccagttaccaggaacgaccaata 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16919 ctggctgaggtggagtggtttggccttgagacttgaaccagttaccaggaacgaccaata 16978
Query: 146 cacctgaagcgatggacctgtcaaagatagccttttcaactttttcaggatctgacccgt 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16979 cacctgaagcgatggacctgtcaaagatagccttttcaactttttcaggatctgacccgt 17038
Query: 206 acttggttgcaaattcgggatgcttggaagcgtcaatgttgacagtaaagaacataccag 265
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17039 acttggttgcaaattcgggatgcttggaagcgtcaatgttgacagtaaagaacataccag 17098
Query: 266 cgattggtggattaatcttgatgtaatcgacttgtggtaggtatttgtacaatgcatcaa 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17099 cgattggtggattaatcttgatgtaatcgacttgtggtaggtatttgtacaatgcatcaa 17158
Query: 326 tacaacagtcacgcttcttggtgtattcgtgtctcaaaccgatcaaccagtccaagtatc 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17159 tacaacagtcacgcttcttggtgtattcgtgtctcaaaccgatcaaccagtccaagtatc 17218
Query: 386 cttcttgaccccagcggttcatggtaccagcgatgatcgattgagtgaaaccagcaggag 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17219 cttcttgaccccagcggttcatggtaccagcgatgatcgattgagtgaaaccagcaggag 17278
Query: 446 cttggatggtcatttcttgtaaacttaagatacgggccaagatgtctttggcaccaacga 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17279 cttggatggtcatttcttgtaaacttaagatacgggccaagatgtctttggcaccaacga 17338
Query: 506 tccaaccgaatcttgtacctggagctaggaccttggacaaagagtccaatcttaatacac 565
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17339 tccaaccgaatcttgtacctggagctaggaccttggacaaagagtccaatcttaatacac 17398
Query: 566 gtccctcggtgtcaatagagacgaaagatttttccaagttttgaatgaactctttatgat 625
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17399 gtccctcggtgtcaatagagacgaaagatttttccaagttttgaatgaactctttatgat 17458
Query: 626 cagcgtaggatttgacaaccctgtttgccggatctttttcgtatttttccatttgcaaga 685
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17459 cagcgtaggatttgacaaccctgtttgccggatctttttcgtatttttccatttgcaaga 17518
Query: 686 agtagtatggttcatcttcaatgataatgaaatcgtgcttttgggcaatacgatagattt 745
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17519 agtagtatggttcatcttcaatgataatgaaatcgtgcttttgggcaatacgatagattt 17578
Query: 746 cttcttttctatcgaaggataaagatgaaccagttggggttttgaccagttgggaacagt 805
||||||| ||||||||||||||||||||||||||| ||||||||||||||| ||||||||
Sbjct: 17579 cttctttcctatcgaaggataaagatgaaccagtt-gggttttgaccagtt-ggaacagt 17636
Query: 806 gtttaataattttggcttagcggcacccttcggtccagttatccaagaatagtctctaac 865
|| ||||||||||||||||||||||||| |||||||||||||||||| |||||||||| |
Sbjct: 17637 gtataataattttggcttagcggcaccc-tcggtccagttatccaag-atagtctctagc 17694
Query: 866 ttgcttggaatgataccgtgttcat-ttatgggatagggaacacgttgacaacttggagc 924
||||||||||||||||||||||||| | |||| |||||||||||||||||| ||| ||||
Sbjct: 17695 ttgcttggaatgataccgtgttcatctaatggaatagggaacacgttgacacctt-gagc 17753
Query: 925 ctccg 929
|||||
Sbjct: 17754 ctccg 17758
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6138
Number of Sequences: 1807
Number of extensions: 6138
Number of successful extensions: 40
Number of sequences better than 1.0e-20: 1
length of query: 935
length of database: 10,358,551
effective HSP length: 16
effective length of query: 919
effective length of database: 10,329,639
effective search space: 9492938241
effective search space used: 9492938241
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)