BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC37ZH11RM1.SCF screened BAC_end
(910 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1587 1671 0.0
>3x_Contig1587
Length = 10277
Score = 1671 bits (843), Expect = 0.0
Identities = 866/871 (99%), Gaps = 2/871 (0%)
Strand = Plus / Minus
Query: 40 aaaggagggcttcgagagcacatttggagaatatttcgagacataattcattcaacactg 99
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3337 aaaggagggcttcgagagcacatttggagaatatttcgagacataattcattcaacactg 3278
Query: 100 cttttgataatccatctatatcagctagttcgtcatccactacgatcagatctcgtagac 159
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3277 cttttgataatccatctatatcagctagttcgtcatccactacgatcagatctcgtagac 3218
Query: 160 ctaggcgggccacaattgtcacgggttcacaacccttaccatccccccttgcatcgtcaa 219
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3217 ctaggcgggccacaattgtcacgggttcacaacccttaccatccccccttgcatcgtcaa 3158
Query: 220 gctttcttgaattgaaatcgcatatgtttggaaacactacagcaagcatttcaagacagc 279
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3157 gctttcttgaattgaaatcgcatatgtttggaaacactacagcaagcatttcaagacagc 3098
Query: 280 aatctttctgtgggaaatcaggacagcctacattacaaaacaataactgtaatactacta 339
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3097 aatctttctgtgggaaatcaggacagcctacattacaaaacaataactgtaatactacta 3038
Query: 340 atacacttcttacagaacaaactttaacgaataacactaatgcaactagtgcagcaacaa 399
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3037 atacacttcttacagaacaaactttaacgaataacactaatgcaactagtgcagcaacaa 2978
Query: 400 ctactctgacttctcctgttggtcagaatagtaatgcaagcatttcacgcttacacaact 459
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2977 ctactctgacttctcctgttggtcagaatagtaatgcaagcatttcacgcttacacaact 2918
Query: 460 tgttaagtacggagaataaggacgtgaatagttcttctgaacaattggcacactcatttt 519
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2917 tgttaagtacggagaataaggacgtgaatagttcttctgaacaattggcacactcatttt 2858
Query: 520 cctcgatggagattgtggacaacaaagtccctggcgatgaatccacgaaggaagctgctt 579
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2857 cctcgatggagattgtggacaacaaagtccctggcgatgaatccacgaaggaagctgctt 2798
Query: 580 ttaatacttcaattaacgagaatcggcctgatgtaatacaggtgaaaatagcagatttag 639
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2797 ttaatacttcaattaacgagaatcggcctgatgtaatacaggtgaaaatagcagatttag 2738
Query: 640 gaaatgcatgttggtacgacgaacattacaccaatgcaatccatacaagagagtatcgtt 699
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 2737 gaaatgcatgttggtacgacgaacattacaccaatgcaatccaaacaagagagtatcgtt 2678
Query: 700 caccagaagtaattctagactgttcttggggtgccagtgcagatatatggtcttttgcct 759
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2677 caccagaagtaattctagactgttcttggggtgccagtgcagatatatggtcttttgcct 2618
Query: 760 gctt-atatttgagcttctcacaggagatttcttgtttgaaccacaaaacggtcactcat 818
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2617 gcttaatatttgagcttctcacaggagatttcttgtttgaaccacaaaacggtcactcat 2558
Query: 819 atacaaaggacgatgaccatattgcgcatatcatagaattactggggcaatatttcagag 878
|||||||||||||||||||||||||||| |||||||||||||| |||||||||| |||||
Sbjct: 2557 atacaaaggacgatgaccatattgcgcaaatcatagaattact-gggcaatattccagag 2499
Query: 879 agtctaatgacgaccggcagagccgttagaa 909
|||||||||||||||||||||||||||||||
Sbjct: 2498 agtctaatgacgaccggcagagccgttagaa 2468
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5830
Number of Sequences: 1807
Number of extensions: 5830
Number of successful extensions: 33
Number of sequences better than 1.0e-20: 1
length of query: 910
length of database: 10,358,551
effective HSP length: 16
effective length of query: 894
effective length of database: 10,329,639
effective search space: 9234697266
effective search space used: 9234697266
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)