BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC37ZH12FM1.SCF screened BAC_end
(957 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1515 1209 0.0
>3x_Contig1515
Length = 8855
Score = 1209 bits (610), Expect = 0.0
Identities = 687/701 (98%), Gaps = 9/701 (1%)
Strand = Plus / Minus
Query: 87 atcataattcttcaaatcaactttatgttctaatgaaccttgctttcctacgaatccagc 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3022 atcataattcttcaaatcaactttatgttctaatgaaccttgctttcctacgaatccagc 2963
Query: 147 aatatatttaatcatttccattttatccatagtactaaagtttcgtttgttgatctctac 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2962 aatatatttaatcatttccattttatccatagtactaaagtttcgtttgttgatctctac 2903
Query: 207 tgcaaattttactggcaccatctcctctttgtggaagtgctgtggtagtactcgttcaca 266
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2902 tgcaaattttactggcaccatctcctctttgtggaagtgctgtggtagtactcgttcaca 2843
Query: 267 aagttttgccaattcttccatactggcatgacatgaatcggtaattggtgttagtttctg 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2842 aagttttgccaattcttccatactggcatgacatgaatcggtaattggtgttagtttctg 2783
Query: 327 cacaaatcttgttcttttcctcaagtcatgtggatcggctagatctctgatgattctatg 386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2782 cacaaatcttgttcttttcctcaagtcatgtggatcggctagatctctgatgattctatg 2723
Query: 387 aacaaacttttctggaacaatcggttttcgggtcttcacaaagactagacactcagtctg 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2722 aacaaacttttctggaacaatcggttttcgggtcttcacaaagactagacactcagtctg 2663
Query: 447 aaggtcgagctgctccaatattggtttgttttttttgagtat-gactatggtagttttat 505
||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||
Sbjct: 2662 aaggtcgagctgctccaatattggtttgttttttttg-gtatcgactatggtagttttat 2604
Query: 506 ggttttttagtccttccaactcttgctgaagttcctcttcaattgaaatctctttcttcg 565
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2603 ggttttttagtccttccaactcttgctgaagttcctcttcaattgaaatctctttcttcg 2544
Query: 566 actctgttgtgacgggttctttactttcgatttcgatggatcctgagccatcaggagatg 625
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 2543 actctgttgtgacgggttctttactttcgatttcgatggatcctgagccatcaggagagg 2484
Query: 626 ccgagttcatggcattgagctcatcagaatagtactcttctaccttttcttc-anaatag 684
|||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||
Sbjct: 2483 ccgagttcatggcattgagctcatcagaatagtactcttctaccttttcttcaaaaatag 2424
Query: 685 aaagaatttcaga-gcagcggccctctcttttgtttcttgcacacgttnatgtagattcc 743
||||||||||||| ||||||||| |||| ||||||||||||||||||| |||||||||||
Sbjct: 2423 aaagaatttcagaggcagcggccttctc-tttgtttcttgcacacgtt-atgtagattcc 2366
Query: 744 tgnaagttgttaggatctaaattgctttttgacaactttat 784
|| ||| |||||||||||| | ||| |||||||||||||||
Sbjct: 2365 tg-aag-tgttaggatctagagtgc-ttttgacaactttat 2328
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7266
Number of Sequences: 1807
Number of extensions: 7266
Number of successful extensions: 56
Number of sequences better than 1.0e-20: 1
length of query: 957
length of database: 10,358,551
effective HSP length: 16
effective length of query: 941
effective length of database: 10,329,639
effective search space: 9720190299
effective search space used: 9720190299
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)