BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC37ZH12RM1.SCF screened BAC_end
(936 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1803 1179 0.0
>3x_Contig1803
Length = 52241
Score = 1179 bits (595), Expect = 0.0
Identities = 636/647 (98%), Gaps = 2/647 (0%)
Strand = Plus / Minus
Query: 46 cttaatgacaaactaaccttgttaaagaccgatcatccaaaattcatcactgtcatattg 105
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 16853 cttaatgacaaactaaccttgttaaagaccgatcatccaaaattcagcactgtcatattg 16794
Query: 106 caggggctctgttcgtcgaatgtgcatcatgtgctctgccatgatgtttcttttttttca 165
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16793 caggggctctgttcgtcgaatgtgcatcatgtgctctgccatgatgtttcttttttttca 16734
Query: 166 ttatatcgaggcgtgttttggtgtttaaactggaaattagggtaaaaatatgtaaaagct 225
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16733 ttatatcgaggcgtgttttggtgtttaaactggaaattagggtaaaaatatgtaaaagct 16674
Query: 226 attcgaaaagtcacacttttttagcagaagacgataccaccaaaaggaaatgtcgatagg 285
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16673 attcgaaaagtcacacttttttagcagaagacgataccaccaaaaggaaatgtcgatagg 16614
Query: 286 ttgttgctttacttaaaactagtttaattagtacatacaccagtttctcgcccaagttct 345
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16613 ttgttgctttacttaaaactagtttaattagtacatacaccagtttctcgcccaagttct 16554
Query: 346 ctacatattgcgaatacaaatcttgtgctgaaagtgcgtatccctaactgctgagcctta 405
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16553 ctacatattgcgaatacaaatcttgtgctgaaagtgcgtatccctaactgctgagcctta 16494
Query: 406 tttctcatattaaagtcatcggtaactagactgacaaaattaaatctctgagtactttgt 465
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16493 tttctcatattaaagtcatcggtaactagactgacaaaattaaatctctgagtactttgt 16434
Query: 466 ccatcttcagatagaggtatgcagtccttacctttttctattgcatcattgttttaaaca 525
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 16433 ccatcttcagatagaggtatgcagtccttacctttttctattgcatcattgtttaaaaca 16374
Query: 526 ttaaacttatcttgtgctttggctatggcatcaatgacaaactcgtcaacatggggattt 585
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 16373 ttaaacttatcttgtgctttggctatggcatcaatgacaaactcgtcaacat-gggattt 16315
Query: 586 tcacgtcatctgcttcttcgatctccaagtgctctttaagatgccctgctacattatccg 645
|||||||||||| |||||||||||||||||||||| ||||||||||||||||||| |||
Sbjct: 16314 ccacgtcatctgc-tcttcgatctccaagtgctcttcaagatgccctgctacattacccg 16256
Query: 646 taaattttaaggcaagtagtttacgctcgtaatatacttgcctaaca 692
||||| ||| |||||||||||||||||||||||||| |||||||||
Sbjct: 16255 taaatcttagggcaagtagtttacgctcgtaatatagctgcctaaca 16209
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8727
Number of Sequences: 1807
Number of extensions: 8727
Number of successful extensions: 87
Number of sequences better than 1.0e-20: 1
length of query: 936
length of database: 10,358,551
effective HSP length: 16
effective length of query: 920
effective length of database: 10,329,639
effective search space: 9503267880
effective search space used: 9503267880
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)