BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC38ZA01FM1.SCF screened BAC_end
(889 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1457 1195 0.0
>3x_Contig1457
Length = 7441
Score = 1195 bits (603), Expect = 0.0
Identities = 649/663 (97%), Gaps = 1/663 (0%)
Strand = Plus / Plus
Query: 20 gcttggtctgtaggtttgagtggatagcacggatgaaataatgcaaatggtaaaattatc 79
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1748 gcttggtctgtaggtttgagtggatagcacggatgaaataatgcaaatggtaaaattatc 1807
Query: 80 actcctgaagaatcagggtcttgagtctgacatctctccattttgaagtacattactctg 139
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 1808 actcctgaagaatcagggtcttgagtctgacaactctccattttgaagtacattactctg 1867
Query: 140 tccagacgcatcatgattatcctccagaataagacgcagtacatacttatcagactttat 199
|||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||
Sbjct: 1868 tccagacgcatcatgacaatcccccagaataagacgcagtacatacttatcagactttat 1927
Query: 200 ccccaagcaaaggccagtttatgccccacgtacacgtgacttcattctttcgaactaatt 259
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1928 ccccaagcaaaggccagtttatgccccacgtacacgtgacttcattctttcgaactaatt 1987
Query: 260 tacccggttatcttctgtcactatcaacgaatagcgaactacattcagttcatgaaaaac 319
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1988 tacccggttatcttctgtcactatcaacgaatagcgaactacattcagttcatgaaaaac 2047
Query: 320 tcagagaatctcgaaaagctaacagcgcatcatgaaagtcttgatctaatagttgttata 379
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2048 tcagagaatctcgaaaagctaacagcgcatcatgaaagtcttgatctaatagttgttata 2107
Query: 380 ttcatatatgggtgaatgtagggtttaattgtccaatagccttgtttattccattcagtg 439
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2108 ttcatatatgggtgaatgtagggtttaattgtccaatagccttgtttattccattcagtg 2167
Query: 440 agctttgaaagtaacaaatataaatacaacaatggatagctcggttccaggtggtcaaag 499
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2168 agctttgaaagtaacaaatataaatacaacaatggatagctcggttccaggtggtcaaag 2227
Query: 500 aactcttcaaaagagaagaaatgctcaattgcaaaaggaaaagaaggctaaccaaacacc 559
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2228 aactcttcaaaagagaagaaatgctcaattgcaaaaggaaaagaaggctaaccaaacacc 2287
Query: 560 agcttctccaagacaggctggatttgggtggttcttccagctctattttgaagcttgaca 619
||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||
Sbjct: 2288 agcttctccaagacaggctggattt-ggtggttcttccagctctattttgaagctttaca 2346
Query: 620 cagatgatgcccatgggttgagagttgaccacttggtgggtttgtacttggctggggcat 679
||||||| ||| |||||||||||||||||| ||||||| ||||| |||||||| ||||
Sbjct: 2347 cagatgaagccaatgggttgagagttgacccattggtggttttgttcttggctgttgcat 2406
Query: 680 ttg 682
|||
Sbjct: 2407 ttg 2409
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5967
Number of Sequences: 1807
Number of extensions: 5967
Number of successful extensions: 36
Number of sequences better than 1.0e-20: 1
length of query: 889
length of database: 10,358,551
effective HSP length: 16
effective length of query: 873
effective length of database: 10,329,639
effective search space: 9017774847
effective search space used: 9017774847
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)