BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC38ZA01RM1.SCF screened BAC_end
(939 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1239 1370 0.0
>3x_Contig1239
Length = 4094
Score = 1370 bits (691), Expect = 0.0
Identities = 807/835 (96%), Gaps = 8/835 (0%)
Strand = Plus / Minus
Query: 49 ttgttaagaaactccctccgtcgaatgatgaagagtcgcttccaatgaatatagactcat 108
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 2011 ttgttaagaaactccctccgacgaatgatgaagagtcgcttccaatgaatatagactcat 1952
Query: 109 tcaggatttatttagaatccttaggggacgcggatcgtattgtggatttggaatcagcag 168
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1951 tcaggatttatttagaatccttaggggacgcggatcgtattgtggatttggaatcagcag 1892
Query: 169 attccaatacagatggaaagataattgatttgaaaaacggtgataggtttgggttagtta 228
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1891 attccaatacagatggaaagataattgatttgaaaaacggtgataggtttgggttagtta 1832
Query: 229 gattagatgagccggtctcagtgaatcaacaacggggagccaaactcaaattcaacttaa 288
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1831 gattagatgagccggtctcagtgaatcaacaacggggagccaaactcaaattcaacttaa 1772
Query: 289 atataagaccaggagcttggcctttcaactacagaattgtgcttactgatgtgacagatc 348
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1771 atataagaccaggagcttggcctttcaactacagaattgtgcttactgatgtgacagatc 1712
Query: 349 aaaaatcgccatgtacatcaaggtcaagtgactttctggactccatcatgcagcatgttt 408
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1711 aaaaatcgccatgtacatcaaggtcaagtgactttctggactccatcatgcagcatgttt 1652
Query: 409 cagacgaatctgattctgagaacgcatggtccaaggcaaccgattggaacgaggaaatta 468
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1651 cagacgaatctgattctgagaacgcatggtccaaggcaaccgattggaacgaggaaatta 1592
Query: 469 aagttgaaattggcaaggaggatgaagttgttgctgtggtagatgatactgcgccaacgg 528
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1591 aagttgaaattggcaaggaggatgaagttgttgctgtggtagatgatactgcgccaacgg 1532
Query: 529 tagcactcaagccaacctctgaccccagtacactgagctcgtccaaggagtcgtctgttt 588
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1531 tagcactcaagccaacctctgaccccagtacactgagctcgtccaaggagtcgtctgttt 1472
Query: 589 ctggtaactctcactctcgtgcatgcatttacatcaacagtgacagcgacagcgacagtg 648
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1471 ctggtaactctcactctcgtgcatgcatttacatcaacagtgacagcgacagcgacagtg 1412
Query: 649 gctatgattaccatactttttatggatccagagaagaagcaccatcacttcaaatgccgc 708
|||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 1411 gctatgatgaccatactttt-atggatccagagaagaagcaccatcacttcaaatgccgc 1353
Query: 709 tttaagagatgatgagggaacagatcaaggtggtcgaactttatgggtgaattaagctaa 768
| ||||||| || |||||||||||||||||||||||| |||| |||||||| | |||||
Sbjct: 1352 tataagagaggaagagggaacagatcaaggtggtcgacgttta-gggtgaataaggctaa 1294
Query: 769 tgggaaagaaatttggtaaaaaaaaaaaaattcgacttatctaaggggttcattaggatt 828
||||| ||||||||||| ||| | || | || ||||||| || | ||||||||||||||
Sbjct: 1293 ggggaa-gaaatttggtagaaagagaagattt-gacttatata-gtggttcattaggatt 1237
Query: 829 tatgttgggttccatttggtacttttggaatttttacctacttgttgcaaatttt 883
|||||||||||||| ||||||| ||||| | ||||| |||| |||||||||||||
Sbjct: 1236 tatgttgggttcca-ttggtac-tttgggagttttagctac-tgttgcaaatttt 1185
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 13,822
Number of Sequences: 1807
Number of extensions: 13822
Number of successful extensions: 186
Number of sequences better than 1.0e-20: 1
length of query: 939
length of database: 10,358,551
effective HSP length: 16
effective length of query: 923
effective length of database: 10,329,639
effective search space: 9534256797
effective search space used: 9534256797
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)