BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC38ZA02FM1.SCF screened BAC_end
(961 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig640 1203 0.0
>3x_Contig640
Length = 3164
Score = 1203 bits (607), Expect = 0.0
Identities = 661/671 (98%), Gaps = 6/671 (0%)
Strand = Plus / Plus
Query: 89 tattagacttcttaaaagacatgaaaattcctgttatgtctgtcggattaggtcctgttt 148
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1154 tattagacttcttaaaagacatgaaaattcctgttatgtctgtcggattaggtcctgttt 1213
Query: 149 acaagcgtgatataatgaaggcttgtactatgttagaaaaagctcctgaattagcggtta 208
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1214 acaagcgtgatataatgaaggcttgtactatgttagaaaaagctcctgaattagcggtta 1273
Query: 209 tgctatgctttgatgtcaaggttgataaggaagcagaacaatatgctgcagaacaacata 268
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1274 tgctatgctttgatgtcaaggttgataaggaagcagaacaatatgctgcagaacaacata 1333
Query: 269 tcaaaattttcaatgctgatattatttaccatttattcgatgccttcacagcctaccaga 328
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1334 tcaaaattttcaatgctgatattatttaccatttattcgatgccttcacagcctaccaga 1393
Query: 329 aggaactacttgaaaagcgtcgtgctgagtttatcggtgacgctaccttcccatgcgtcc 388
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1394 aggaactacttgaaaagcgtcgtgctgagtttatcggtgacgctaccttcccatgcgtcc 1453
Query: 389 tgaacactctacaaatcattaacaagcgtggccctatgatcattggtgtggatgtcattg 448
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1454 tgaacactctacaaatcattaacaagcgtggccctatgatcattggtgtggatgtcattg 1513
Query: 449 aaggttcattgaagatcggtactcctatctgtgcagtgaaatatgacccagcaacaaagg 508
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1514 aaggttcattgaagatcggtactcctatctgtgcagtgaaatatgacccagcaacaaagg 1573
Query: 509 agagaataacattgttgcttggtagagtcacttccttggaaatcaatcaccaatctgtga 568
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1574 agagaataacattgttgcttggtagagtcacttccttggaaatcaatcaccaatctgtga 1633
Query: 569 ctgaagtcaagaagggtcaaaccaatgcaggtgttgcaatgcgtttagaagatcctttcg 628
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 1634 ctgaagtcaagaagggtcaaaccaatgcaggtgttgcaatgcgtttagaagatccttccg 1693
Query: 629 gtcagcaaccaatctggggtcgtcatgttgatggaaaagatacattggattcctcacatc 688
||||||||||||||||||||||||||||||||| ||||||||||||| ||| ||||||||
Sbjct: 1694 gtcagcaaccaatctggggtcgtcatgttgatgaaaaagatacattgtatt-ctcacatc 1752
Query: 689 acttagaaggtcccattgatacattggaaagatcctgcttttcagagatcaagtttccat 748
|| |||||||| ||||||||||||| |||||||||||| |||||||||||||| |||||
Sbjct: 1753 ac-tagaaggt-ccattgatacatt-gaaagatcctgc-tttcagagatcaag-ttccaa 1807
Query: 749 aatctgattgg 759
|||||||||||
Sbjct: 1808 aatctgattgg 1818
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6740
Number of Sequences: 1807
Number of extensions: 6740
Number of successful extensions: 51
Number of sequences better than 1.0e-20: 1
length of query: 961
length of database: 10,358,551
effective HSP length: 16
effective length of query: 945
effective length of database: 10,329,639
effective search space: 9761508855
effective search space used: 9761508855
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)