BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC38ZA02RM1.SCF screened BAC_end
(935 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1772 1001 0.0
>3x_Contig1772
Length = 25851
Score = 1001 bits (505), Expect = 0.0
Identities = 614/645 (95%), Gaps = 4/645 (0%)
Strand = Plus / Plus
Query: 43 gcttcgcggtagttcctgctccgttagaccacgagtttgtattgcttgttggacacttag 102
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5026 gcttcgcggtagttcctgctccgttagaccacgagtttgtattgcttgttggacacttag 5085
Query: 103 tttgaattgttcaagtcgccgcagtggccttgcttttttttctatccctcggtcaatcaa 162
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5086 tttgaattgttcaagtcgccgcagtggccttgcttttttttctatccctcggtcaatcaa 5145
Query: 163 atctagtgcgtctccggatgcatccatattgatcaacaactgggagaaactttcgtaata 222
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5146 atctagtgcgtctccggatgcatccatattgatcaacaactgggagaaactttcgtaata 5205
Query: 223 caatgctaatctatctccgatttcaagtctcatcatgtagacgaacatttctcttttttc 282
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5206 caatgctaatctatctccgatttcaagtctcatcatgtagacgaacatttctcttttttc 5265
Query: 283 atccaatttgacggcaaatagatcaatatactgtaaccacaacttcaagtatcgtacatc 342
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5266 atccaatttgacggcaaatagatcaatatactgtaaccacaacttcaagtatcgtacatc 5325
Query: 343 gtttttgtacgtttcaatattcttgcagtactctatacatctttccattatctctggtaa 402
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5326 gtttttgtacgtttcaatattcttgcagtactctatacatctttccattatctctggtaa 5385
Query: 403 gccagattgtcttgtggtgggagaaggatagttatcgtgaatccagttgatatactctaa 462
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5386 gccagattgtcttgtggtgggagaaggatagttatcgtgaatccagttgatatactctaa 5445
Query: 463 aaacaattgcaatggatcatcaagttcatccaatgtattatggatatcacgttcgaatgc 522
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||
Sbjct: 5446 aaacaattgcaatggatcatcaagttcatccaatgtatcatggatatcacgttcgaaggc 5505
Query: 523 gagccctgtattctatttagaactcaaagatttggtcatagccaaagtgacgcttgtcgc 582
||||| ||||| ||| ||||||||| ||||||| ||||||| ||||||||| ||||||
Sbjct: 5506 gagccttgtatcatatatagaactcagagatttgttcatagcagaagtgacgcgtgtcgc 5565
Query: 583 agatcggtcctttagtgaccgatattattattct-tttttttgccctcaattcttc-aaa 640
||||| |||||| || | |||||||| |||||| ||| | |||| |||||| || |||
Sbjct: 5566 agatc-gtccttgaggtagcgatatta-tattctctttctgtgcctccaattcatcgaaa 5623
Query: 641 tggattggcccccttatccccctttcagaaaattggcccctattt 685
|||||||| ||| |||||| |||| |||||| |||| |||||||
Sbjct: 5624 tggattggacccattatcctccttccagaaatctggcacctattt 5668
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8709
Number of Sequences: 1807
Number of extensions: 8709
Number of successful extensions: 71
Number of sequences better than 1.0e-20: 1
length of query: 935
length of database: 10,358,551
effective HSP length: 16
effective length of query: 919
effective length of database: 10,329,639
effective search space: 9492938241
effective search space used: 9492938241
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)