BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC38ZA03RM1.SCF screened BAC_end
(926 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1752 1392 0.0
>3x_Contig1752
Length = 22471
Score = 1392 bits (702), Expect = 0.0
Identities = 779/796 (97%), Gaps = 7/796 (0%)
Strand = Plus / Plus
Query: 49 atgcccataaatttcctgcataactggtagatttcatctaagtaatgtaacacacttatg 108
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5694 atgcccataaatttcctgcataactggtagatttcatctaagtaatgtaacacacttatg 5753
Query: 109 ggagaaacactattattcacttgcattatcatagcgaaatataggttatcacgagttatc 168
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5754 ggagaaacactattattcacttgcattatcatagcgaaatataggttatcacgagttatc 5813
Query: 169 acagcgtaatgccacccattgccttcgaatataggttttgtgcatcccttatgatgttta 228
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5814 acagcgtaatgccacccattgccttcgaatataggttttgtgcatcccttatgatgttta 5873
Query: 229 aggttattctgtaattgaagtatagcatcatcaaggaaatggatcggtcgtagtgctctt 288
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5874 aggttattctgtaattgaagtatagcatcatcaaggaaatggatcggtcgtagtgctctt 5933
Query: 289 cttattagcggttcatacgtctcatcgagcaaaaggaaacatgatgacattatgacaagg 348
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5934 cttattagcggttcatacgtctcatcgagcaaaaggaaacatgatgacattatgacaagg 5993
Query: 349 ctgatttgaccatcagttgatagttaactcggcactctaaatttacttcaggtctcggtt 408
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5994 ctgatttgaccatcagttgatagttaactcggcactctaaatttacttcaggtctcggtt 6053
Query: 409 aggtttgcagttactatatatgctagaataaatggctttgaaggtgtttgttcaaagcac 468
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6054 aggtttgcagttactatatatgctagaataaatggctttgaaggtgtttgttcaaagcac 6113
Query: 469 ttttgataaaatggtgcttcttgtgttttgtttcttctcaatatttttagttaataaaga 528
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6114 ttttgataaaatggtgcttcttgtgttttgtttcttctcaatatttttagttaataaaga 6173
Query: 529 tttcttacatcttggaattctatcaactacgcatagagagatgctggaaaaggtaataaa 588
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6174 tttcttacatcttggaattctatcaactacgcatagagagatgctggaaaaggtaataaa 6233
Query: 589 tgccactcttcaagcactgaatagtatagacatgtacaataagatagtanaacaggtacc 648
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 6234 tgccactcttcaagcactgaatagtatagacatgtacaataagatagtaaaacaggtacc 6293
Query: 649 agtgctgttgccaccaaaacttctgacacaagatctcagaaaattgcctaaatggagatt 708
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 6294 agtgctgttgccaccaaaacttctgacacaagaactcagaaaattgcctaaatggagatt 6353
Query: 709 tatggagaatgaaattggttagagattataagttcanagaattttgaagagacattggag 768
|||||||||| |||||||||||||||||||||||| || |||||||||||||| |||||
Sbjct: 6354 aatggagaatg-aattggttagagattataagttcagag-attttgaagagaca-tggag 6410
Query: 769 ttttttgaaacaagttgcccatgaagtcacactttatggggcccatcatccctacattta 828
||||||||| |||||| |||||| ||||||| |||||||| ||||||| |||||| |||
Sbjct: 6411 ttttttgaacaaagttg-ccatgaggtcacac-ttatgggg-ccatcat-cctacaatta 6466
Query: 829 ctacttactacaacag 844
||||| |||||||||
Sbjct: 6467 ctactacctacaacag 6482
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6285
Number of Sequences: 1807
Number of extensions: 6285
Number of successful extensions: 37
Number of sequences better than 1.0e-20: 1
length of query: 926
length of database: 10,358,551
effective HSP length: 16
effective length of query: 910
effective length of database: 10,329,639
effective search space: 9399971490
effective search space used: 9399971490
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)