BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC38ZA04RM1.SCF screened BAC_end
(929 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1426 1217 0.0
>3x_Contig1426
Length = 8319
Score = 1217 bits (614), Expect = 0.0
Identities = 688/706 (97%), Gaps = 5/706 (0%)
Strand = Plus / Plus
Query: 39 aatacattgctgaaggggttggaggccgaaagtattatccgttccatcaaaacaaagtat 98
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 7051 aatacattgctgaaggggttgg-ggccgaaagtattatccgttccatcaaaacaaagtat 7109
Query: 99 tatatttttactggtggtgctctgaccagtgcccaaagaggatgatgccattgaatttct 158
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 7110 tatatttttactggtggtactctgaccagtgcccaaagaggatgatgccattgaatttct 7169
Query: 159 aagaaaagcatagaagagctatgctattttttttggcacttttttcggcttgatgtctcg 218
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7170 aagaaaagcatagaagagctatgctattttttttggcacttttttcggcttgatgtctcg 7229
Query: 219 aaatactaggtttatatacagaagctgctcgagctggtgtatcgagcgccacatattaca 278
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7230 aaatactaggtttatatacagaagctgctcgagctggtgtatcgagcgccacatattaca 7289
Query: 279 tccaatgctgtatgatcttttgtgtcagtggcatcaaaaagaaaaaaaatatctttcgtt 338
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7290 tccaatgctgtatgatcttttgtgtcagtggcatcaaaaagaaaaaaaatatctttcgtt 7349
Query: 339 acccgcatttgtgacagaaatttcactcaatctgaatgatgaagccagcatagatagaag 398
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 7350 acccgcatttgtgacagaaatttcactcaatctgaatgaggaagccagcatagatagaag 7409
Query: 399 ataattcaagggtgctacaaaggtaaatgtttaatcggtatctctattagctgatttaag 458
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7410 agaattcaagggtgctacaaaggtaaatgtttaatcggtatctctattagctgatttaag 7469
Query: 459 tacccaaactttctttaacttatcaaatactgcgacatcttttaagattttccgaacacg 518
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7470 tacccaaactttctttaacttatcaaatactgcgacatcttttaagattttccgaacacg 7529
Query: 519 ttctacgtcggttgagtttgttagctgtgatccgactctaatcactagatctgctgattt 578
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 7530 ttctacgtcggttgagtttgttagctgtaatccgactctaatcactagatctgctgattt 7589
Query: 579 gcttccaaaccctgggtgactgagatagatatttttcaatgggacgcttttaataccttg 638
||| |||||||| |||||||||||||||||||||||||| ||||||||| | ||||| |
Sbjct: 7590 gctcgcaaaccct-ggtgactgagatagatatttttcaat-ggacgctttgagtacctcg 7647
Query: 639 gcgctcttctcgtccttctgtgtagcatctgattgaatgtcctctccttttaattttctt 698
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 7648 gcgctcttctcgtccttctgtgtagcatctgattgaatgtcctct-cttttaattttctc 7706
Query: 699 ccgctcttacttattcccgggtcaattttcttgcaaacttgctgtc 744
||||||| || || |||||| |||||||||||||||||||||||||
Sbjct: 7707 ccgctctaacgta-tcccggttcaattttcttgcaaacttgctgtc 7751
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 9889
Number of Sequences: 1807
Number of extensions: 9889
Number of successful extensions: 86
Number of sequences better than 1.0e-20: 1
length of query: 929
length of database: 10,358,551
effective HSP length: 16
effective length of query: 913
effective length of database: 10,329,639
effective search space: 9430960407
effective search space used: 9430960407
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)